3OKL

Crystal structure of S25-39 in complex with Kdo(2.8)Kdo


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 3OKL

Classification: IMMUNE SYSTEM

Total Structure Weight: 48787.66

Macromolecule Entities
Molecule Chains Length Organism Details
S25-39 Fab (IgG1k) light chain A 219 Mus musculus
S25-39 Fab (IgG1k) heavy chain B 222 Mus musculus

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
KDA
Query on KDA

B (3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O- ALLYL
C11 H18 O8
LEEKAQBTVJRLOA-UEWQFTGXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
KDO
Query on KDO

B 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
C8 H14 O8
NNLZBVFSCVTSLA-HXUQBWEZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.191
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.53 α = 90.00
b = 81.66 β = 90.00
c = 131.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-25
  • Released Date: 2011-04-06
  • Deposition author(s): Blackler, R.J., Evans, S.V.

Revision History

  • Version 1_0: 2011-04-06

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance