3OKD

Crystal structure of S25-39 in complex with Kdo


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 3OKD

Classification: IMMUNE SYSTEM

Total Structure Weight: 48635.53

Macromolecule Entities
Molecule Chains Length Organism Details
S25-39 Fab (IgG1k) light chain A 219 Mus musculus
S25-39 Fab (IgG1k) heavy chain B 222 Mus musculus

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
KDO
Query on KDO

B 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
C8 H14 O8
NNLZBVFSCVTSLA-HXUQBWEZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.233
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.75 α = 90.00
b = 82.01 β = 90.00
c = 131.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-24
  • Released Date: 2011-04-06
  • Deposition author(s): Blackler, R.J., Evans, S.V.

Revision History

  • Version 1_0: 2011-04-06

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance