Crystal structure of Saccharomyces Cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine and 2 molecules of cognate RNA DOI:10.2210/pdb3oij/pdb   NDB ID: NA0688

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosomal Protein Structure Weight: 65655.98 Molecule: Essential for mitotic growth 1 Polymer: 1 Type: protein Length: 253 Chains: A, B EC#: 2.1.1    Organism Saccharomyces cerevisiae Gene Names EMG1 NEP1 YLR186W L9470.5 UniProtKB:   Protein Feature View | Search PDB | Q06287     Molecule: 5'-R(*GP*GP*GP*CP*UP*UP*CP*AP*AP*CP*GP*CP*CP*C)-3' Polymer: 2 Type: rna Length: 14 Chains: C, D     Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Expression System: Escherichia coli   Polymer: 2 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 3O7B  Crystal structure of Archaeoglobus Fulgidus Nep1 bound to S-adenosylhomocysteine  3OII  The same protein bound to S-adenosylhomocysteine  3OIN  The same protein bound to S-adenosylhomocysteine and 1 molecule of cognate RNA      Ligand Chemical Component Hide Identifier Formula Name Interactions MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer SAH Search  Download  C14 H20 N6 O5 S S-ADENOSYL-L-HOMOCYSTEINE   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam   GO Terms: 21 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA0688     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Thomas, S.R.,  LaRonde-LeBlanc, N. Deposition:   2010-08-19 Release:   2010-12-01 Last Modified (REVDAT):   2011-04-13     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   3.00 R-Value: 0.190 (obs.) R-Free: 0.260 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 83.38 α = 90.00  b = 91.86 β = 90.00  c = 96.93 γ = 90.00