Download MendeleyThe V59W mutation blocks the distal pocket of the hemoglobin - dehaloperoxidase from Amphitirite ornata
Davis, M.F., de Serrano, V.S., Gracz, H., Vendreix, F.A.P., Somasundram, A., Negrerie, M., Franzen, S.To be published.
3O7N
The V59W mutation blocks the distal pocket of the hemoglobin - dehaloperoxidase from Amphitrite ornata
- PDB DOI: https://doi.org/10.2210/pdb3O7N/pdb
- Classification: OXYGEN TRANSPORT
- Organism(s): Amphitrite ornata
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2010-07-30 Released: 2011-07-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.72 Å
- R-Value Free: 0.237
- R-Value Work: 0.173
- R-Value Observed: 0.177
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dehaloperoxidase A | 137 | Amphitrite ornata | Mutation(s): 1 Gene Names: dhpA |  | |
UniProt | |||||
Find proteins for Q9NAV8 (Amphitrite ornata) Explore Q9NAV8 Go to UniProtKB: Q9NAV8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9NAV8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | C [auth A], G [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
| BML Query on BML | D [auth A], H [auth B] | 4-BROMOPHENOL C6 H5 Br O GZFGOTFRPZRKDS-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | E [auth A], F [auth A], I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.72 Å
- R-Value Free: 0.237
- R-Value Work: 0.173
- R-Value Observed: 0.177
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.925 | α = 90 |
| b = 67.305 | β = 90 |
| c = 69.253 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2011-07-13 Deposition Author(s): de Serrano, V.S., Davis, M.F., Franzen, S.
Revision History (Full details and data files)
- Version 1.0: 2011-07-13
Type: Initial release - Version 1.1: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
