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Structure-function study of Gemini derivatives with two different side chains at C-20, Gemini-0072 and Gemini-0097.
3O1D
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/transcription Activator
    Structure Weight: 36235.46
    Molecule: Vitamin D3 receptor A
    Polymer: 1 Type: protein Length: 302
    Chains: A
    Fragment: Ligand Binding Domain (UNP Residues 156-453)
    Organism Danio rerio
    Gene Names vdra nr1i1a vdr
    UniProtKB:   Protein Feature View | Search PDB | Q9PTN2  
    Molecule: Nuclear receptor coactivator 2
    Polymer: 2 Type: protein Length: 13
    Chains: B
    Organism Homo sapiens
    Gene Names NCOA2 BHLHE75 TIF2
    UniProtKB:   Protein Feature View | Search PDB | Q15596  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Danio rerio   Taxonomy   Common Name: Leopard danio,zebra danio,zebra fish Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2HC4   
    2HCD   
    3O1E   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    G72
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    G72 C31 H44 F6 O4
    (1R,3R,7E,17beta)-17-[(1S)-6,6,6-trifluoro- 5-hydroxy-1-(4-hydroxy-4-methylpentyl)-5- (trifluoromethyl)hex-3-yn-1-yl]-9,10-secoestra- 5,7-diene-1,3-diol
    G72:3O1D
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Huet, T.,  Moras, D.,  Rochel, N.

    Deposition:   2010-07-21
    Release:   2011-07-06
    Last Modified (REVDAT):   2012-03-21
     
  •   Revision History    Hide
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    2012-03-21
    Citation
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.40
    R-Value: 0.212 (obs.)
    R-Free: 0.267
    Space Group: P 65 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 66.11 α = 90.00 
    b = 66.11 β = 90.00 
    c = 264.64 γ = 120.00