3O1D

Structure-function study of Gemini derivatives with two different side chains at C-20, Gemini-0072 and Gemini-0097.

Structural Biology Knowledgebase: 3O1D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.209

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3O1D

Classification: TRANSCRIPTION / TRANSCRIPTION ACTIVATOR

Total Structure Weight: 36235.46

Macromolecule Entities
Molecule Chains Length Organism Details
Vitamin D3 receptor A A 302 Danio rerio Fragment: Ligand Binding Domain (UNP Residues 156-453)
Gene Name(s): vdra nr1i1a vdr
Nuclear receptor coactivator 2 B 13 Homo sapiens Gene Name(s): NCOA2 Gene View BHLHE75 SRC2 TIF2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
G72
Query on G72

A (1R,3R,7E,17beta)-17-[(1S)-6,6,6-trifluoro- 5-hydroxy-1-(4-hydroxy-4-methylpentyl)-5- (trifluoromethyl)hex-3-yn-1-yl]-9,10-secoestra- 5,7-diene-1,3-diol
1,25-dihydroxy-20S-21(3-trideuteromethyl- 3-hydroxy-4,4,4-trideuterobutyl)-23-yne-26,27- hexafluoro-19-nor-cholecalciferol (Gemini- 0072) (Synonym)
C31 H44 F6 O4
RAYDHJNMFBHXHA-KPUKIUDSSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.209
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.11 α = 90.00
b = 66.11 β = 90.00
c = 264.64 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-21
  • Released Date: 2011-07-06
  • Deposition author(s): Huet, T., Moras, D., Rochel, N.

Revision History

  • 2012-03-21
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4