Download MendeleyStructure of the Natural Killer cell activating receptor NKp30 and dissection of ligand binding site
Joyce, M.G., Tran, P., Zhuravleva, M.A., Jaw, J., Colonna, M., Sun, P.D.(2011) Proc Natl Acad Sci U S A
3NOI
Crystal Structure of Natural Killer Cell Cytotoxicity Receptor NKp30 (NCR3)
- PDB DOI: https://doi.org/10.2210/pdb3NOI/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-06-25 Released: 2011-03-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.204
- R-Value Work: 0.164
- R-Value Observed: 0.166
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Natural cytotoxicity triggering receptor 3 | 120 | Homo sapiens | Mutation(s): 0 Gene Names: NKp30, 1C7, LY117, NCR3 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O14931 (Homo sapiens) Explore O14931 Go to UniProtKB: O14931 | |||||
PHAROS: O14931 GTEx: ENSG00000204475 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O14931 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 1PG Query on 1PG | H [auth A], K [auth B], L [auth B] | 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL C11 H24 O6 SLNYBUIEAMRFSZ-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.204
- R-Value Work: 0.164
- R-Value Observed: 0.166
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.1 | α = 90 |
| b = 53.02 | β = 107.73 |
| c = 51.952 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| BALBES | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-03-30 Deposition Author(s): Joyce, M.G., Sun, P.D.
Revision History (Full details and data files)
- Version 1.0: 2011-03-30
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-12-27
Changes: Data collection, Database references, Derived calculations
