3MXW

Crystal structure Sonic hedgehog bound to the 5E1 fab fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 3MXW

Classification: SIGNALING PROTEIN

Total Structure Weight: 66879.98

Macromolecule Entities
Molecule Chains Length Organism Details
Sonic hedgehog protein A 169 Homo sapiens Gene Name(s): SHH Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
5E1 light chain L 214 Homo sapiens
5E1 heavy chain H 220 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.176
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 60.31 α = 90.00
b = 90.54 β = 90.00
c = 111.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-07
  • Released Date: 2010-05-26
  • Deposition author(s): Hymowitz, S.G., Maun, H.R.

Revision History

  • 2011-07-13
    Type: Advisory, Refinement description, Version format compliance