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Structure of SopB(155-272)-18mer complex, P21 form
DOI:10.2210/pdb3mkz/pdb   NDB ID: NA0509
3MKZ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 75303.16
    Molecule: Protein sopB
    Polymer: 1 Type: protein Length: 121
    Chains: A, B, N, U
    Fragment: UNP residues 155 to 272
    Organism Escherichia coli K-12
    Gene Names sopB B ECOK12F047
    UniProtKB:   Protein Feature View | Search PDB | P62558  
    Molecule: DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')
    Polymer: 2 Type: dna Length: 18
    Chains: C, D, Y, Z
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3MKW  SopB(155-272)-18mer,I23 crystal form 
    3MKY  SopB(155-323)-18mer, I23 crystal form 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA0509
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Schumacher, M.A.

    Deposition:   2010-04-15
    Release:   2010-05-05
    Last Modified (REVDAT):   2010-08-11
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.98
    R-Value: 0.213 (obs.)
    R-Free: 0.264
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 111.38 α = 90.00 
    b = 47.12 β = 115.97 
    c = 118.23 γ = 90.00