Structure of yeast 20S open-gate proteasome with Compound 8 DOI:10.2210/pdb3mg7/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase Structure Weight: 722708.76 Molecule: Proteasome component Y7 Polymer: 1 Type: protein Length: 250 Chains: A, O EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE8 PRS4 YML092C UniProtKB:   Protein Feature View | Search PDB | P23639     Molecule: Proteasome component Y13 Polymer: 2 Type: protein Length: 245 Chains: B, P EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE9 PRS5 YGR135W UniProtKB:   Protein Feature View | Search PDB | P23638     Molecule: Proteasome component PRE6 Polymer: 3 Type: protein Length: 243 Chains: C, Q EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE6 YOL038W UniProtKB:   Protein Feature View | Search PDB | P40303     Molecule: Proteasome component PUP2 Polymer: 4 Type: protein Length: 250 Chains: D, R EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PUP2 DOA5 YGR253C G9155 UniProtKB:   Protein Feature View | Search PDB | P32379     Molecule: Proteasome component PRE5 Polymer: 5 Type: protein Length: 234 Chains: E, S EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE5 YMR314W YM9924.06 UniProtKB:   Protein Feature View | Search PDB | P40302     Molecule: Proteasome component C1 Polymer: 6 Type: protein Length: 248 Chains: F, T EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE10 PRC1 PRS1 YOR362C O6650 UniProtKB:   Protein Feature View | Search PDB | P21242     Molecule: Proteasome component C7-alpha Polymer: 7 Type: protein Length: 252 Chains: G, U EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names SCL1 PRC2 PRS2 YGL011C UniProtKB:   Protein Feature View | Search PDB | P21243     Molecule: Proteasome component PUP1 Polymer: 8 Type: protein Length: 222 Chains: H, V EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PUP1 YOR157C UniProtKB:   Protein Feature View | Search PDB | P25043     Molecule: Proteasome component PUP3 Polymer: 9 Type: protein Length: 205 Chains: I, W EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PUP3 YER094C UniProtKB:   Protein Feature View | Search PDB | P25451     Molecule: Proteasome component C11 Polymer: 10 Type: protein Length: 198 Chains: J, X EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE1 YER012W UniProtKB:   Protein Feature View | Search PDB | P22141     Molecule: Proteasome component PRE2 Polymer: 11 Type: protein Length: 212 Chains: K, Y EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE2 DOA3 PRG1 YPR103W P8283.10 UniProtKB:   Protein Feature View | Search PDB | P30656     Molecule: Proteasome component C5 Polymer: 12 Type: protein Length: 241 Chains: L, Z EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE7 PRS3 PTS1 YBL041W YBL0407 UniProtKB:   Protein Feature View | Search PDB | P23724     Molecule: Proteasome component PRE4 Polymer: 13 Type: protein Length: 266 Chains: 1, M EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE4 YFR050C UniProtKB:   Protein Feature View | Search PDB | P30657     Molecule: Proteasome component PRE3 Polymer: 14 Type: protein Length: 196 Chains: 2, N EC#: 3.4.25.1    Organism Saccharomyces cerevisiae Gene Names PRE3 YJL001W J1407 UniProtKB:   Protein Feature View | Search PDB | P38624         Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 2 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 3 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 4 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 5 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 6 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 7 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 8 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 9 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 10 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 11 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 12 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 13 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast   Polymer: 14 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast       Related PDB Entries Hide Identifier Details 3MG0    3MG4    3MG6    3MG8        Ligand Chemical Component Hide Identifier Formula Name Interactions L2T Search  Download  C36 H39 N3 O5 4-(benzyloxy)-N-[(1S,2R)-2-hydroxy-1-({(1S)- 1-[(2-methylbenzyl)carbamoyl]-3-phenylpropyl}carbamoyl)propyl]benzamide   Ligand Explorer MES Search  Download  C6 H13 N O4 S 2-(N-MORPHOLINO)-ETHANESULFONIC ACID   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) L2T Search  Download  N/A in BindingDB N/A in BindingMoad IC50: 13 nM - data from PDBbind       External Domain Annotations Hide Pfam Classification: 22 Domains - data from Pfam   GO Terms: 244 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Sintchak, M.D. Deposition:   2010-04-05 Release:   2011-05-18     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.78 R-Value: 0.218 (obs.) R-Free: 0.259 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 136.02 α = 90.00  b = 300.38 β = 113.73  c = 145.81 γ = 90.00      Molecule of the Month Hide Ubiquitin