3M8P

HIV-1 RT with NNRTI TMC-125


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 3M8P

Classification: TRANSFERASE

Total Structure Weight: 116544.45

Macromolecule Entities
Molecule Chains Length Organism Details
Reverse transcriptase/ribonuclease H A 561 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.26.4 IUBMB
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
p51 RT B 440 Human immunodeficiency virus 1 Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
65B
Query on 65B

A 4-({6-AMINO-5-BROMO-2-[(4-CYANOPHENYL)AMINO]PYRIMIDIN- 4-YL}OXY)-3,5-DIMETHYLBENZONITRILE
Etravine; Etravirine (Synonym)
C20 H15 Br N6 O
PYGWGZALEOIKDF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
65B IC50: 370 nM (97) BindingDB

N/A in BindingMoad
IC50: 2.1 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.209
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 118.44 α = 90.00
b = 153.53 β = 90.00
c = 154.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-18
  • Released Date: 2010-05-19
  • Deposition author(s): Harris, S.F., Villasenor, A.

Revision History

  • Version 1_0: 2010-05-19

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2012-07-18

    Type: Non-polymer description