3LIZ

crystal structure of bla g 2 complexed with Fab 4C3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 3LIZ

Classification: hydrolase / immune system

Total Structure Weight: 89237.23

Macromolecule Entities
Molecule Chains Length Organism Details
Aspartic protease Bla g 2 A 334 Blattella germanica EC#: 3.4.23 IUBMB
Mutation: N93Q
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
4C3 monoclonal antibody Light Chain L 211 Mus musculus
4C3 monoclonal antibody Heavy Chain H 253 Mus musculus

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.177
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 155.21 α = 90.00
b = 105.29 β = 132.58
c = 109.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-01-25
  • Released Date: 2010-12-15
  • Deposition author(s): Li, M., Gustchina, A., Glesner, J., Wunschmann, S., Pomes, A., Wlodawer, A.

Revision History

  • Version 1_0: 2010-12-15

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2014-11-26

    Type: Database references

  • Version 1_3: 2017-11-01

    Type: Refinement description