3L4M

Crystal Structure of the MauG/pre-Methylamine Dehydrogenase Complex.

Structural Biology Knowledgebase: 3L4M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.135

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3L4M

Classification: OXIDOREDUCTASE / ELECTRON TRANSPORT

Total Structure Weight: 200290.66

Macromolecule Entities
Molecule Chains Length Organism Details
Methylamine utilization protein mauG A, B 373 Paracoccus denitrificans EC#: 1 IUBMB
Gene Name(s): mauG Pden_4736
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Methylamine dehydrogenase light chain C, E 137 Paracoccus denitrificans EC#: 1.4.9.1 IUBMB
Fragment: Beta chain of immature methylamine dehydrogenase (preMADH)
Gene Name(s): Pden_4733
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Methylamine dehydrogenase heavy chain D, F 386 Paracoccus denitrificans EC#: 1.4.9.1 IUBMB
Gene Name(s): Pden_4730
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEC
Query on HEC

A, B HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1PE
Query on 1PE

F PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG4
Query on PG4

F TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

F ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
0AF
Query on 0AF
C, E L-PEPTIDE LINKING C11 H12 N2 O3 TRP

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.135
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.53 α = 109.94
b = 83.52 β = 91.54
c = 107.78 γ = 105.78

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-12-21
  • Released Date: 2010-03-23
  • Deposition author(s): Jensen, L.M.R., Wilmot, C.M.

Revision History

  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor