Topoisomerase II-DNA cleavage complex, metal-bound
DOI:10.2210/pdb3l4k/pdb   NDB ID: NA0417
3L4K
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Isomerase/dna
    Structure Weight: 104470.53
    Molecule: DNA topoisomerase 2
    Polymer: 1 Type: protein Length: 757
    Chains: A
    EC#: 5.99.1.3   
    Fragment: RESIDUES 421-1177
    Organism: Saccharomyces cerevisiae
    Gene Names: TOP2 TOR3 YNL088W N2244
    UniProtKB: Protein Feature View | Search PDB | P06786  
    Molecule: DNA (5'-D(P*CP*CP*TP*AP*CP*TP*GP*CP*TP*AP*C)-3')
    Polymer: 2 Type: dna Length: 11
    Chains: B
    Molecule: DNA (5'-D(*CP*GP*CP*GP*GP*TP*AP*GP*CP*AP*GP*TP*AP*GP*G)-3')
    Polymer: 3 Type: dna Length: 15
    Chains: C
    Molecule: DNA (5'-D(P*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*)-3')
    Polymer: 4 Type: dna Length: 10
    Chains: D
    Molecule: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*CP*GP*TP*CP*AP*TP*CP*C)-3')
    Polymer: 5 Type: dna Length: 15
    Chains: E
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Brewer's yeast,lager beer yeast,yeast Expression System: Saccharomyces cerevisiae  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 5
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3L4J   The same protein without zinc ions soaked in 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    TSP
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    TSP C10 H15 N2 O7 P S
    3'-THIO-THYMIDINE-5'-PHOSPHATE
    TSP:3L4K
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    PTR
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    PTR C9 H12 N O6 P TYR lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA0417
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 generated by PISA (software)
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