Crystal structure of the antithrombin-factor IXa-pentasaccharide complex DOI:10.2210/pdb3kcg/pdb

3KCG   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase , Hydrolase Inhibitor Structure Weight: 84989.94 Molecule: Coagulation factor IXa light chain Polymer: 1 Type: protein Length: 59 Chains: L EC#: 3.4.21.22    Fragment: EGF2 Organism Homo sapiens Gene Name F9 UniProtKB:   Protein Feature View | Search PDB | P00740     Molecule: Coagulation factor IXa heavy chain Polymer: 2 Type: protein Length: 235 Chains: H EC#: 3.4.21.22    Mutation: S195A Organism Homo sapiens Gene Name F9 UniProtKB:   Protein Feature View | Search PDB | P00740   Molecule: Antithrombin-III Polymer: 3 Type: protein Length: 432 Chains: I Mutation: S137A Organism Homo sapiens Gene Names SERPINC1 AT3 PRO0309 UniProtKB:   Protein Feature View | Search PDB | P01008         Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human   Polymer: 5 Scientific Name: Synthetic construct   Taxonomy     Polymer: 6 Scientific Name: Synthetic construct   Taxonomy         Ligand Chemical Component Hide Identifier Formula Name Interactions CA Search  Download  Ca CALCIUM ION   Ligand Explorer FUC Search  Download  C6 H12 O5 ALPHA-L-FUCOSE   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer MPD Search  Download  C6 H14 O2 (4S)-2-METHYL-2,4-PENTANEDIOL   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer NTP Search  Download  C36 H60 O55 S9 HEPARIN PENTASACCHARIDE   Ligand Explorer     External Domain Annotations Hide CATH Classification v3.4.0: 3 Domains - data from CATH   Pfam Classification: 2 Domains - data from Pfam   GO Terms: 15 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Huntington, J.A.,  Johnson, D.J.D. Deposition:   2009-10-21 Release:   2010-02-02     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.70 R-Value: 0.208 (obs.) R-Free: 0.230 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 78.78 α = 90.00  b = 88.44 β = 90.00  c = 147.23 γ = 90.00      Molecule of the Month Hide Thrombin Trypsin Serpins Tissue Factor Fibrin