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Structural characterization of mRNA-tRNA translocation intermediates (30S ribosome of class 4a of the six classes)
3J0V
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3J0V   3J0W  
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The complete entry has been assigned PDB ID 4V6O and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v6o.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v6o.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 852391.82
    Molecule: 16S ribosomal RNA
    Polymer: 1 Type: rna Length: 1542
    Chains: A
    Organism: Escherichia coli
    Molecule: A site tRNA
    Polymer: 2 Type: rna Length: 76
    Chains: B
    Organism: Escherichia coli
    Molecule: mRNA
    Polymer: 3 Type: rna Length: 47
    Chains: C
    Organism: Escherichia coli
    Molecule: P site tRNA
    Polymer: 4 Type: rna Length: 77
    Chains: D
    Organism: Escherichia coli
    Molecule: 30S ribosomal protein S2
    Polymer: 5 Type: protein Length: 240
    Chains: E
    Organism: Escherichia coli
    Gene Names: rpsB b0169 JW0164
    UniProtKB: Protein Feature View | Search PDB | P0A7V0  
    Molecule: 30S ribosomal protein S3
    Polymer: 6 Type: protein Length: 232
    Chains: F
    Organism: Escherichia coli
    Gene Names: rpsC b3314 JW3276
    UniProtKB: Protein Feature View | Search PDB | P0A7V3  
    Molecule: 30S ribosomal protein S4
    Polymer: 7 Type: protein Length: 205
    Chains: G
    Organism: Escherichia coli
    Gene Names: rpsD ramA b3296 JW3258
    UniProtKB: Protein Feature View | Search PDB | P0A7V8  
    Molecule: 30S ribosomal protein S5
    Polymer: 8 Type: protein Length: 166
    Chains: H
    Organism: Escherichia coli
    Gene Names: rpsE spc b3303 JW3265
    UniProtKB: Protein Feature View | Search PDB | P0A7W1  
    Molecule: 30S ribosomal protein S6
    Polymer: 9 Type: protein Length: 135
    Chains: I
    Organism: Escherichia coli
    Gene Names: rpsF b4200 JW4158
    UniProtKB: Protein Feature View | Search PDB | P02358  
    Molecule: 30S ribosomal protein S7
    Polymer: 10 Type: protein Length: 178
    Chains: J
    Organism: Escherichia coli
    Gene Names: rpsG b3341 JW3303
    UniProtKB: Protein Feature View | Search PDB | P02359  
    Molecule: 30S ribosomal protein S8
    Polymer: 11 Type: protein Length: 129
    Chains: K
    Organism: Escherichia coli
    Gene Names: rpsH b3306 JW3268
    UniProtKB: Protein Feature View | Search PDB | P0A7W7  
    Molecule: 30S ribosomal protein S9
    Polymer: 12 Type: protein Length: 129
    Chains: L
    Organism: Escherichia coli
    Gene Names: rpsI b3230 JW3199
    UniProtKB: Protein Feature View | Search PDB | P0A7X3  
    Molecule: 30S ribosomal protein S10
    Polymer: 13 Type: protein Length: 103
    Chains: M
    Organism: Escherichia coli
    Gene Names: rpsJ nusE b3321 JW3283
    UniProtKB: Protein Feature View | Search PDB | P0A7R5  
    Molecule: 30S ribosomal protein S11
    Polymer: 14 Type: protein Length: 128
    Chains: N
    Organism: Escherichia coli
    Gene Names: rpsK b3297 JW3259
    UniProtKB: Protein Feature View | Search PDB | P0A7R9  
    Molecule: 30S ribosomal protein S12
    Polymer: 15 Type: protein Length: 123
    Chains: O
    Organism: Escherichia coli
    Gene Names: rpsL strA b3342 JW3304
    UniProtKB: Protein Feature View | Search PDB | P0A7S3  
    Molecule: 30S ribosomal protein S13
    Polymer: 16 Type: protein Length: 117
    Chains: P
    Organism: Escherichia coli
    Gene Names: rpsM b3298 JW3260
    UniProtKB: Protein Feature View | Search PDB | P0A7S9  
    Molecule: 30S ribosomal protein S14
    Polymer: 17 Type: protein Length: 100
    Chains: Q
    Organism: Escherichia coli
    Gene Names: rpsN b3307 JW3269
    UniProtKB: Protein Feature View | Search PDB | P0AG59  
    Molecule: 30S ribosomal protein S15
    Polymer: 18 Type: protein Length: 88
    Chains: R
    Organism: Escherichia coli
    Gene Names: rpsO Z4526 ECs4046
    UniProtKB: Protein Feature View | Search PDB | Q8X9M2  
    Molecule: 30S ribosomal protein S16
    Polymer: 19 Type: protein Length: 82
    Chains: S
    Organism: Escherichia coli
    Gene Names: rpsP b2609 JW2590
    UniProtKB: Protein Feature View | Search PDB | P0A7T3  
    Molecule: 30S ribosomal protein S17
    Polymer: 20 Type: protein Length: 83
    Chains: T
    Organism: Escherichia coli
    Gene Names: rpsQ neaA b3311 JW3273
    UniProtKB: Protein Feature View | Search PDB | P0AG63  
    Molecule: 30S ribosomal protein S18
    Polymer: 21 Type: protein Length: 74
    Chains: U
    Organism: Escherichia coli
    Gene Names: rpsR b4202 JW4160
    UniProtKB: Protein Feature View | Search PDB | P0A7T7  
    Molecule: 30S ribosomal protein S19
    Polymer: 22 Type: protein Length: 91
    Chains: V
    Organism: Escherichia coli
    Gene Names: rpsS b3316 JW3278
    UniProtKB: Protein Feature View | Search PDB | P0A7U3  
    Molecule: 30S ribosomal protein S20
    Polymer: 23 Type: protein Length: 86
    Chains: W
    Organism: Escherichia coli
    Gene Names: rpsT b0023 JW0022
    UniProtKB: Protein Feature View | Search PDB | P0A7U7  
    Molecule: 30S ribosomal protein S21
    Polymer: 24 Type: protein Length: 70
    Chains: X
    Organism: Escherichia coli
    Gene Names: rpsU b3065 JW3037
    UniProtKB: Protein Feature View | Search PDB | P68679  
     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 8
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 9
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 10
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 11
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 12
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 13
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 14
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 15
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 16
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 17
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 18
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 19
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 20
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 21
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 22
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 23
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 24
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2I2U  30S ribosome from Escherichia coli 
    2I2V  50S ribosome from Escherichia coli 
    3J0T  50S ribosome of Class 2 
    3J0U  30S ribosome of Class 2 
    3J0X  30S ribosome of Class 4B 
    3J0Y  50S ribosome of Class 4B 
    3J0Z  30S ribosome of Class 5 
    3J10  30S ribosome of Class 6 
    3J11  50S ribosome of Class 3 
    3J12  50S ribosome of Class 5 
    3J13  30S ribosome of Class 3 
    3J14  50S ribosome of Class 6 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FME
    Search 
    Download 
    FME C6 H11 N O3 S
    N-FORMYLMETHIONINE
    TRP
    Search 
    Download 
    TRP C11 H12 N2 O2
    TRYPTOPHAN
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    PSU
    Search 
    PSU C9 H13 N2 O9 P U rnaLinking
    7MG
    Search 
    7MG C11 H18 N5 O8 P G rnaLinking
    2MG
    Search 
    2MG C11 H16 N5 O8 P G rnaLinking
    5MC
    Search 
    5MC C10 H16 N3 O8 P C rnaLinking
    4OC
    Search 
    4OC C11 H18 N3 O8 P C rnaLinking
    UR3
    Search 
    UR3 C10 H15 N2 O9 P U rnaLinking
    MA6
    Search 
    MA6 C12 H18 N5 O7 P A rnaLinking
    4SU
    Search 
    4SU C9 H13 N2 O8 P S U rnaLinking
    H2U
    Search 
    H2U C9 H15 N2 O9 P U rnaLinking
    OMC
    Search 
    OMC C10 H16 N3 O8 P C rnaLinking
    MIA
    Search 
    MIA C16 H26 N5 O7 P S A rnaLinking
    5MU
    Search 
    5MU C10 H15 N2 O9 P U rnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (3J0V and 3J0W)