Structural characterization of mRNA-tRNA translocation intermediates (30S ribosome of class2 of the six classes)
3J0U
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3J0T    3J0U   
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The complete entry has been assigned PDB ID 4V6N and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4v6n.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4v6n.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 852391.82
    Molecule: 16S ribosomal RNA
    Polymer: 1 Type: rna Length: 1542
    Chains: A
    Organism: Escherichia coli
    Molecule: A site tRNA
    Polymer: 2 Type: rna Length: 76
    Chains: B
    Organism: Escherichia coli
    Molecule: mRNA
    Polymer: 3 Type: rna Length: 47
    Chains: C
    Organism: Escherichia coli
    Molecule: P site tRNA
    Polymer: 4 Type: rna Length: 77
    Chains: D
    Organism: Escherichia coli
    Molecule: 30S ribosomal protein S2
    Polymer: 5 Type: protein Length: 240
    Chains: E
    Organism: Escherichia coli
    Gene Names: rpsB b0169 JW0164
    UniProtKB: Protein Feature View | Search PDB | P0A7V0  
    Molecule: 30S ribosomal protein S3
    Polymer: 6 Type: protein Length: 232
    Chains: F
    Organism: Escherichia coli
    Gene Names: rpsC b3314 JW3276
    UniProtKB: Protein Feature View | Search PDB | P0A7V3  
    Molecule: 30S ribosomal protein S4
    Polymer: 7 Type: protein Length: 205
    Chains: G
    Organism: Escherichia coli
    Gene Names: rpsD ramA b3296 JW3258
    UniProtKB: Protein Feature View | Search PDB | P0A7V8  
    Molecule: 30S ribosomal protein S5
    Polymer: 8 Type: protein Length: 166
    Chains: H
    Organism: Escherichia coli
    Gene Names: rpsE spc b3303 JW3265
    UniProtKB: Protein Feature View | Search PDB | P0A7W1  
    Molecule: 30S ribosomal protein S6
    Polymer: 9 Type: protein Length: 135
    Chains: I
    Organism: Escherichia coli
    Gene Names: rpsF b4200 JW4158
    UniProtKB: Protein Feature View | Search PDB | P02358  
    Molecule: 30S ribosomal protein S7
    Polymer: 10 Type: protein Length: 178
    Chains: J
    Organism: Escherichia coli
    Gene Names: rpsG b3341 JW3303
    UniProtKB: Protein Feature View | Search PDB | P02359  
    Molecule: 30S ribosomal protein S8
    Polymer: 11 Type: protein Length: 129
    Chains: K
    Organism: Escherichia coli
    Gene Names: rpsH b3306 JW3268
    UniProtKB: Protein Feature View | Search PDB | P0A7W7  
    Molecule: 30S ribosomal protein S9
    Polymer: 12 Type: protein Length: 129
    Chains: L
    Organism: Escherichia coli
    Gene Names: rpsI b3230 JW3199
    UniProtKB: Protein Feature View | Search PDB | P0A7X3  
    Molecule: 30S ribosomal protein S10
    Polymer: 13 Type: protein Length: 103
    Chains: M
    Organism: Escherichia coli
    Gene Names: rpsJ nusE b3321 JW3283
    UniProtKB: Protein Feature View | Search PDB | P0A7R5  
    Molecule: 30S ribosomal protein S11
    Polymer: 14 Type: protein Length: 128
    Chains: N
    Organism: Escherichia coli
    Gene Names: rpsK b3297 JW3259
    UniProtKB: Protein Feature View | Search PDB | P0A7R9  
    Molecule: 30S ribosomal protein S12
    Polymer: 15 Type: protein Length: 123
    Chains: O
    Organism: Escherichia coli
    Gene Names: rpsL strA b3342 JW3304
    UniProtKB: Protein Feature View | Search PDB | P0A7S3  
    Molecule: 30S ribosomal protein S13
    Polymer: 16 Type: protein Length: 117
    Chains: P
    Organism: Escherichia coli
    Gene Names: rpsM b3298 JW3260
    UniProtKB: Protein Feature View | Search PDB | P0A7S9  
    Molecule: 30S ribosomal protein S14
    Polymer: 17 Type: protein Length: 100
    Chains: Q
    Organism: Escherichia coli
    Gene Names: rpsN b3307 JW3269
    UniProtKB: Protein Feature View | Search PDB | P0AG59  
    Molecule: 30S ribosomal protein S15
    Polymer: 18 Type: protein Length: 88
    Chains: R
    Organism: Escherichia coli
    Gene Names: rpsO Z4526 ECs4046
    UniProtKB: Protein Feature View | Search PDB | Q8X9M2  
    Molecule: 30S ribosomal protein S16
    Polymer: 19 Type: protein Length: 82
    Chains: S
    Organism: Escherichia coli
    Gene Names: rpsP b2609 JW2590
    UniProtKB: Protein Feature View | Search PDB | P0A7T3  
    Molecule: 30S ribosomal protein S17
    Polymer: 20 Type: protein Length: 83
    Chains: T
    Organism: Escherichia coli
    Gene Names: rpsQ neaA b3311 JW3273
    UniProtKB: Protein Feature View | Search PDB | P0AG63  
    Molecule: 30S ribosomal protein S18
    Polymer: 21 Type: protein Length: 74
    Chains: U
    Organism: Escherichia coli
    Gene Names: rpsR b4202 JW4160
    UniProtKB: Protein Feature View | Search PDB | P0A7T7  
    Molecule: 30S ribosomal protein S19
    Polymer: 22 Type: protein Length: 91
    Chains: V
    Organism: Escherichia coli
    Gene Names: rpsS b3316 JW3278
    UniProtKB: Protein Feature View | Search PDB | P0A7U3  
    Molecule: 30S ribosomal protein S20
    Polymer: 23 Type: protein Length: 86
    Chains: W
    Organism: Escherichia coli
    Gene Names: rpsT b0023 JW0022
    UniProtKB: Protein Feature View | Search PDB | P0A7U7  
    Molecule: 30S ribosomal protein S21
    Polymer: 24 Type: protein Length: 70
    Chains: X
    Organism: Escherichia coli
    Gene Names: rpsU b3065 JW3037
    UniProtKB: Protein Feature View | Search PDB | P68679  
     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 8
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 9
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 10
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 11
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 12
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 13
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 14
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 15
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 16
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 17
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 18
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 19
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 20
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 21
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 22
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 23
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 24
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2I2U   30S ribosome from Escherichia coli 
    2I2V   50S ribosome from Escherichia coli 
    3J0V   30S ribosome of Class 4A 
    3J0W   50S ribosome of Class 4A 
    3J0X   30S ribosome of Class 4B 
    3J0Y   50S ribosome of Class 4B 
    3J0Z   30S ribosome of Class 5 
    3J10   30S ribosome of Class 6 
    3J11   50S ribosome of Class 3 
    3J12   50S ribosome of Class 5 
    3J13   30S ribosome of Class 3 
    3J14   50S ribosome of Class 6 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FME
    Search 
    Download 
    FME C6 H11 N O3 S
    N-FORMYLMETHIONINE
    TRP
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    Download 
    TRP C11 H12 N2 O2
    TRYPTOPHAN
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    PSU
    Search 
    PSU C9 H13 N2 O9 P U rnaLinking
    7MG
    Search 
    7MG C11 H18 N5 O8 P G rnaLinking
    2MG
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    2MG C11 H16 N5 O8 P G rnaLinking
    5MC
    Search 
    5MC C10 H16 N3 O8 P C rnaLinking
    4OC
    Search 
    4OC C11 H18 N3 O8 P C rnaLinking
    UR3
    Search 
    UR3 C10 H15 N2 O9 P U rnaLinking
    MA6
    Search 
    MA6 C12 H18 N5 O7 P A rnaLinking
    4SU
    Search 
    4SU C9 H13 N2 O8 P S U rnaLinking
    H2U
    Search 
    H2U C9 H15 N2 O9 P U rnaLinking
    OMC
    Search 
    OMC C10 H16 N3 O8 P C rnaLinking
    MIA
    Search 
    MIA C16 H26 N5 O7 P S A rnaLinking
    5MU
    Search 
    5MU C10 H15 N2 O9 P U rnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Composite of PDB entries (3J0T and 3J0U)