Macromolecules
Sequence Display for 3IXS

Classification: PROTEIN BINDING

Total Structure Weight: 100786.96

Macromolecule Entities
Molecule Chains Length Organism Details
E3 ubiquitin-protein ligase RING2 A, C, E..., G, I, KA, C, E, G, I, K 111 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: C-terminal Domain (UNP residues 223-333)
Mutation: N306D
Gene Name(s): RNF2 Gene View BAP1 Gene View DING HIPI3 RING1B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RING1 and YY1-binding protein B, D, F..., H, J, LB, D, F, H, J, L 37 Homo sapiens Fragment: C-terminal domain (UNP residues 145-179)
Gene Name(s): RYBP Gene View DEDAF YEAF1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NHE
Query on NHE

C 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
N-CYCLOHEXYLTAURINE; CHES (Synonym)
C8 H17 N O3 S
MKWKNSIESPFAQN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, C, E, H 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.203
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 37.89 α = 100.88
b = 56.55 β = 90.61
c = 100.35 γ = 100.49

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-09-04
  • Released Date: 2010-08-25
  • Deposition author(s): Wang, R., Taylor, A.B., Kim, C.A.

Revision History

  • 2011-07-13
    Type: Version format compliance