3ICU

Protease-associated domain of the E3 ligase grail


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 3ICU

Classification: LIGASE

Total Structure Weight: 21272.95

Macromolecule Entities
Molecule Chains Length Organism Details
E3 ubiquitin-protein ligase RNF128 A 194 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: UNP residues 38-204
Gene Name(s): RNF128 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.195
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 65.79 α = 90.00
b = 65.79 β = 90.00
c = 136.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-18
  • Released Date: 2009-09-29
  • Deposition author(s): Walker, J.R., Yermekbayeva, L., Seitova, A., Weigelt, J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2009-09-29

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_2: 2017-11-01

    Type: Refinement description