3IA8

The structure of the C-terminal heme nitrobindin domain of THAP domain-containing protein 4 from Homo sapiens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 3IA8

Classification: METAL BINDING PROTEIN

Total Structure Weight: 38575.62

Macromolecule Entities
Molecule Chains Length Organism Details
THAP domain-containing protein 4 A, B 163 Homo sapiens Fragment: sequence database residues 415-577
Gene Name(s): THAP4 Gene View CGI-36 PP238
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.165
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 41.93 α = 90.00
b = 74.69 β = 90.00
c = 103.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-13
  • Released Date: 2009-07-28
  • Deposition author(s): Bianchetti, C.M., Bingman, C.A., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • Version 1_0: 2009-07-28

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-11-01

    Type: Refinement description