POP-OUT | CLOSE
MyPDB Login - Username: Password:

About: MyPDB stores and automatically runs your favorite queries. Email alerts are sent when matching structures are found.

    MyPDB Login
MyPDB: Login | Register
RCSB PDB Protein Data Bank | Home A Member of the wwPDB

An Information Portal to Biological Macromolecular Structures

As of Tuesday Feb 09, 2010 at 4 PM PST there are 63271 Structures RSS Feed for the Latest Released Structures Help | Latest Released  |  PDB Statistics Help | PDB Statistics
RCSB PDB Protein Data Bank | Home

Print Options: BW Safe Color Safe Print




URL:
 
 
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
 
 
DOI:10.2210/pdb3i20/pdb   NDB ID: NA0082
3I20
 
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
3I1Z   3I20   3I21   3I22  
Download All Files   
 
 
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1360136.38
     
    Molecule:23S rRNA
    Polymer:1Type:polyribonucleotideLength:2903
    Chains:A
    Molecule:5S rRNA
    Polymer:2Type:polyribonucleotideLength:118
    Chains:B
    Molecule:50S ribosomal protein L2
    Polymer:3Type:polypeptide(L)Length:273
    Chains:C
    Molecule:50S ribosomal protein L3
    Polymer:4Type:polypeptide(L)Length:209
    Chains:D
    Molecule:50S ribosomal protein L4
    Polymer:5Type:polypeptide(L)Length:201
    Chains:E
    Molecule:50S ribosomal protein L5
    Polymer:6Type:polypeptide(L)Length:179
    Chains:F
    Molecule:50S ribosomal protein L6
    Polymer:7Type:polypeptide(L)Length:177
    Chains:G
    Molecule:50S ribosomal protein L9
    Polymer:8Type:polypeptide(L)Length:149
    Chains:H
    Molecule:50S ribosomal protein L11
    Polymer:9Type:polypeptide(L)Length:142
    Chains:I
    Molecule:50S ribosomal protein L13
    Polymer:10Type:polypeptide(L)Length:142
    Chains:J
    Molecule:50S ribosomal protein L14
    Polymer:11Type:polypeptide(L)Length:123
    Chains:K
    Molecule:50S ribosomal protein L15
    Polymer:12Type:polypeptide(L)Length:144
    Chains:L
    Molecule:50S ribosomal protein L16
    Polymer:13Type:polypeptide(L)Length:136
    Chains:M
    Molecule:50S ribosomal protein L17
    Polymer:14Type:polypeptide(L)Length:127
    Chains:N
    Molecule:50S ribosomal protein L18
    Polymer:15Type:polypeptide(L)Length:117
    Chains:O
    Molecule:50S ribosomal protein L19
    Polymer:16Type:polypeptide(L)Length:115
    Chains:P
    Molecule:50S ribosomal protein L20
    Polymer:17Type:polypeptide(L)Length:118
    Chains:Q
    Molecule:50S ribosomal protein L21
    Polymer:18Type:polypeptide(L)Length:103
    Chains:R
    Molecule:50S ribosomal protein L22
    Polymer:19Type:polypeptide(L)Length:110
    Chains:S
    Molecule:50S ribosomal protein L23
    Polymer:20Type:polypeptide(L)Length:100
    Chains:T
    Molecule:50S ribosomal protein L24
    Polymer:21Type:polypeptide(L)Length:104
    Chains:U
    Molecule:50S ribosomal protein L25
    Polymer:22Type:polypeptide(L)Length:94
    Chains:V
    Molecule:50S ribosomal protein L27
    Polymer:23Type:polypeptide(L)Length:85
    Chains:W
    Molecule:50S ribosomal protein L28
    Polymer:24Type:polypeptide(L)Length:78
    Chains:X
    Molecule:50S ribosomal protein L29
    Polymer:25Type:polypeptide(L)Length:63
    Chains:Y
    Molecule:50S ribosomal protein L30
    Polymer:26Type:polypeptide(L)Length:59
    Chains:Z
    Molecule:50S ribosomal protein L32
    Polymer:27Type:polypeptide(L)Length:57
    Chains:0
    Molecule:50S ribosomal protein L33
    Polymer:28Type:polypeptide(L)Length:55
    Chains:1
    Molecule:50S ribosomal protein L34
    Polymer:29Type:polypeptide(L)Length:46
    Chains:2
    Molecule:50S ribosomal protein L35
    Polymer:30Type:polypeptide(L)Length:65
    Chains:3
    Molecule:50S ribosomal protein L36
    Polymer:31Type:polypeptide(L)Length:38
    Chains:4
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 4
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 5
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 6
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 7
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 8
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 9
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 10
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 11
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 12
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 13
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 14
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 15
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 16
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 17
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 18
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 19
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 20
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 21
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 22
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 23
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 24
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 25
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 26
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 27
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 28
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 29
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 30
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
    Polymer: 31
    Scientific Name: Escherichia coli k-12 Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    3I1M   
    3I1N   
    3I1O   
    3I1P   
    3I1Q   
    3I1R   
    3I1S   
    3I1T   
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
    ZN     ZINC ION Zn 3DLigand Explorer Link out to Ligand Expos:ZN Link out to SuperLigands:ZN Link out to SuperHapten:ZN
     
     
  •  
    Move Section Derived Data Hide
     
     
 
< Biological Assembly 1    Help >
View in Jmol
Composite of PDB entries (3I1Z and 3I20)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Zhang, W.,   Dunkle, J.A.,   Cate, J.H.D.

    Deposition:   2009-06-28
    Release:   2009-09-01
    Last Modified (REVDAT):   2009-12-15
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors
    View a histogram of Resolution Resolution[Å]: 3.71
    R-Value: 0.228 (obs.)
    R-Free: 0.268
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 210.95 α = 90.00 
    b = 433.08 β = 90.00 
    c = 624.49 γ = 90.00