POP-OUT | CLOSE
Distinct recognition of three-way DNA junctions by the two enantiomers of a metallo-supramolecular cylinder ('helicate')
DOI:10.2210/pdb3i1d/pdb   NDB ID: NA0057
3I1D
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7341.68
    Molecule: 5'-D(*CP*GP*TP*AP*CP*G)-3'
    Polymer: 1 Type: dna Length: 6
    Chains: A, B
    Details: Palindromic hexanucleotide
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2ET0  Recognition of DNA three-way junctions by the M helical enantiomer of a metallo-supramolecular cylinder 
    3FX8  Distinct recognition of three-way DNA junctions by a thioester variant of a metallo-supramolecular cylinder ('helicate') 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FE2
    Search 
    Download 
    FE2 Fe
    FE (II) ION
    NPM
    Search 
    Download 
    NPM C25 H20 N4
    N-[(1E)-PYRIDIN-2-YLMETHYLENE]-N-[4-(4-{[(1E)- PYRIDIN-2-YLMETHYLENE]AMINO}BENZYL)PHENYL]AMINE
    NPM:3I1D
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA0057
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Boer, D.R.,  Uson, I.,  Hannon, M.J.,  Coll, M.

    Deposition:   2009-06-26
    Release:   2011-01-12
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.50
    R-Value: 0.245 (obs.)
    R-Free: 0.259
    Space Group: P 43 3 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 74.97 α = 90.00 
    b = 74.97 β = 90.00 
    c = 74.97 γ = 90.00