Complete RNA polymerase II elongation complex VI DOI:10.2210/pdb3hoy/pdb   NDB ID: NA0034

3HOY   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transcription , Transferase/dna/rna Hybrid Structure Weight: 549720.82 Molecule: DNA-directed RNA polymerase II subunit RPB1 Polymer: 1 Type: protein Length: 1733 Chains: A EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPO21 RPB1 RPB220 SUA8 YDL140C D2150 UniProtKB:   Protein Feature View | Search PDB | P04050     Molecule: DNA-directed RNA polymerase II subunit RPB2 Polymer: 2 Type: protein Length: 1224 Chains: B EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB2 RPB150 RPO22 YOR151C UniProtKB:   Protein Feature View | Search PDB | P08518     Molecule: DNA-directed RNA polymerase II subunit RPB3 Polymer: 3 Type: protein Length: 347 Chains: C EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB3 YIL021W UniProtKB:   Protein Feature View | Search PDB | P16370     Molecule: DNA-directed RNA polymerase II subunit RPB4 Polymer: 4 Type: protein Length: 221 Chains: D EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB4 YJL140W J0654 UniProtKB:   Protein Feature View | Search PDB | P20433     Molecule: DNA-directed RNA polymerases I, II, and III subunit RPABC1 Polymer: 5 Type: protein Length: 215 Chains: E EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB5 RPA7 RPC9 YBR154C YBR1204 UniProtKB:   Protein Feature View | Search PDB | P20434     Molecule: DNA-directed RNA polymerases I, II, and III subunit RPABC2 Polymer: 6 Type: protein Length: 155 Chains: F EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPO26 RPB6 YPR187W P9677.8 UniProtKB:   Protein Feature View | Search PDB | P20435     Molecule: DNA-directed RNA polymerase II subunit RPB7 Polymer: 7 Type: protein Length: 171 Chains: G EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB7 YDR404C D9509.22 UniProtKB:   Protein Feature View | Search PDB | P34087     Molecule: DNA-directed RNA polymerases I, II, and III subunit RPABC3 Polymer: 8 Type: protein Length: 146 Chains: H EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB8 YOR224C YOR50-14 UniProtKB:   Protein Feature View | Search PDB | P20436     Molecule: DNA-directed RNA polymerase II subunit RPB9 Polymer: 9 Type: protein Length: 122 Chains: I EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB9 YGL070C UniProtKB:   Protein Feature View | Search PDB | P27999     Molecule: DNA-directed RNA polymerases I, II, and III subunit RPABC5 Polymer: 10 Type: protein Length: 70 Chains: J EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB10 YOR210W UniProtKB:   Protein Feature View | Search PDB | P22139     Molecule: DNA-directed RNA polymerase II subunit RPB11 Polymer: 11 Type: protein Length: 120 Chains: K EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPB11 YOL005C UniProtKB:   Protein Feature View | Search PDB | P38902     Molecule: DNA-directed RNA polymerases I, II, and III subunit RPABC4 Polymer: 12 Type: protein Length: 70 Chains: L EC#: 2.7.7.6    Organism Saccharomyces cerevisiae Gene Names RPC10 RPB12 YHR143W-A YHR143BW UniProtKB:   Protein Feature View | Search PDB | P40422     Molecule: 5'-D(*CP*CP*AP*AP*GP*CP*TP*CP*AP*AP*G*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*TP*AP*CP*TP*AP*GP*TP*AP*CP*TP*GP*CP*C)-3' Polymer: 13 Type: dna Length: 41 Chains: T Molecule: 5'-D(*CP*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*AP*GP*TP*AP*AP*AP*CP*TP*AP*GP*TP*AP*TP*T*GP*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP*T)-3' Polymer: 14 Type: dna Length: 41 Chains: N Molecule: 5'-R(*UP*AP*UP*AP*UP*GP*CP*A*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*A)-3' Polymer: 15 Type: rna Length: 20 Chains: P     Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 2 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 3 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 4 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 5 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 6 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 7 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 8 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 9 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 10 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 11 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 12 Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast   Polymer: 13 Scientific Name: Synthetic construct   Taxonomy     Polymer: 14 Scientific Name: Synthetic construct   Taxonomy     Polymer: 15 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 3HOU    3HOV    3HOW    3HOX    3HOZ        Ligand Chemical Component Hide Identifier Formula Name Interactions MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type BRU Search  C9 H12 Br N2 O8 P DU dnaLinking     External Domain Annotations Hide CATH Classification v3.4.0: 13 Domains - data from CATH   Pfam Classification: 30 Domains - data from Pfam   GO Terms: 191 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA0034     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Sydow, J.F.,  Brueckner, F.,  Cheung, A.C.M.,  Damsma, G.E.,  Dengl, S.,  Lehmann, E.,  Vassylyev, D.,  Cramer, P. Deposition:   2009-06-03 Release:   2009-07-28 Last Modified (REVDAT):   2010-01-19     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   3.40 R-Value: 0.216 (work) R-Free: 0.254 Space Group: C 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 222.14 α = 90.00  b = 392.69 β = 90.00  c = 282.38 γ = 90.00      Molecule of the Month Hide RNA Polymerase