3H6G

Crystal structure of the GluR6 amino terminal domain dimer assembly

Structural Biology Knowledgebase: 3H6G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.204

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3H6G

Classification: MEMBRANE PROTEIN

Total Structure Weight: 91651.11

Macromolecule Entities
Molecule Chains Length Organism Details
Glutamate receptor, ionotropic kainate 2 A, B 395 Rattus norvegicus Fragment: UNP residues 32-420
Gene Name(s): Grik2 Glur6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TLA
Query on TLA

A, B L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.204
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 172.07 α = 90.00
b = 172.07 β = 90.00
c = 111.55 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-04-23
  • Released Date: 2009-05-26
  • Deposition author(s): Kumar, J., Mayer, M.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update