Structure of mouse CD1d in complex with PBS-25 DOI:10.2210/pdb3gmp/pdb

3GMP   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Immune System Structure Weight: 47737.06 Molecule: T-cell surface glycoprotein CD1d1 Polymer: 1 Type: protein Length: 287 Chains: A Fragment: UNP residues 19-297 Organism Mus musculus Gene Names Cd1d1 Cd1.1 UniProtKB:   Protein Feature View | Search PDB | P11609     Molecule: Beta-2 microglobulin Polymer: 2 Type: protein Length: 99 Chains: B Fragment: UNP residues 21-119 Organism Mus musculus Gene Name B2m UniProtKB:   Protein Feature View | Search PDB | P01887         Source Hide Polymer: 1 Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Spodoptera frugiperda   Polymer: 2 Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Spodoptera frugiperda   Polymer: 4 Scientific Name: Synthetic construct   Taxonomy     Polymer: 5 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1Z5L  same protein bound to alpha-galactosyl ceramide  2AKR  same protein bound to sulfatide  2FIK  same protein bound to microbial alpha-galacturonosyl ceramide  2Q7Y  same protein bound to mCD1d  3GML  same protein in complex with C6Ph  3GMM  same protein in complex with C8Ph  3GMN  same protein in complex with C10Ph  3GMO  same protein in complex with C8PhF  3GMQ  same protein no ligand added  3GMR  same protein bound to C8Ph, different space group      Ligand Chemical Component Hide Identifier Formula Name Interactions BMA Search  Download  C6 H12 O6 BETA-D-MANNOSE   Ligand Explorer EDO Search  Download  C2 H6 O2 1,2-ETHANEDIOL   Ligand Explorer FUC Search  Download  C6 H12 O5 ALPHA-L-FUCOSE   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer PBS Search  Download  C32 H63 N O9 (2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]- 2-AMINO-OCTADECANE-3,4-DIOL   Ligand Explorer PLM Search  Download  C16 H32 O2 PALMITIC ACID   Ligand Explorer     External Domain Annotations Hide CATH Classification v3.4.0: 3 Domains - data from CATH   Pfam Classification: 2 Domains - data from Pfam   GO Terms: 40 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Schiefner, A.,  Wilson, I.A. Deposition:   2009-03-14 Release:   2009-11-10 Last Modified (REVDAT):   2011-07-13     Revision History    Hide Mouse over text for details 2011-07-13 Flag residual B-value 2011-07-13 Refinement description 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.70 R-Value: 0.178 (obs.) R-Free: 0.216 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 41.71 α = 90.00  b = 97.73 β = 106.52  c = 55.49 γ = 90.00      Molecule of the Month Hide Major Histocompatibility Complex T-Cell Receptor