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Distinct recognition of three-way DNA junctions by a thioester variant of a metallo-supramolecular cylinder ('helicate')
DOI:10.2210/pdb3fx8/pdb   NDB ID: BD0109
3FX8
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 2821.60
    Molecule: (5'-D(*CP*GP*TP*AP*CP*G)-3'
    Polymer: 1 Type: dna Length: 6
    Chains: C
    Details: Synthetic hexanucleotide
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2ET0  Recognition of three-way DNA junctions by a metallo-supramolecular cylinder ('helicate') at two distinct sites 
    3FX9  Distinct recognition of three-way DNA junctions by the two enantiomers of a metallo-supramolecular cylinder ('helicate') 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    5PM
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    5PM C24 H18 N4 S
    4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}
    5PM:3FX8
    FE2
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    FE2 Fe
    FE (II) ION
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: BD0109
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Boer, D.R.,  Uson, I.,  Coll, M.

    Deposition:   2009-01-20
    Release:   2010-03-16
    Last Modified (REVDAT):   2010-03-31
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.44
    R-Value: 0.187 (obs.)
    R-Free: 0.212
    Space Group: P 21 3
    Unit Cell:
      Length [Å] Angles [°]
    a = 49.25 α = 90.00 
    b = 49.25 β = 90.00 
    c = 49.25 γ = 90.00