3F1C

CRYSTAL STRUCTURE OF 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase from Listeria monocytogenes

• PDB DOI: https://doi.org/10.2210/pdb3F1C/pdb

• Classification: TRANSFERASE
• Organism(s): Listeria monocytogenes serotype 4b str. F2365
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-10-27 Released: 2008-11-18 
• Deposition Author(s): Patskovsky, Y., Ho, J., Toro, R., Gilmore, M., Miller, S., Groshong, C., Sauder, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.277 
• R-Value Work: 0.241 
• R-Value Observed: 0.242 

Literature

CRYSTAL STRUCTURE OF 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase from Listeria monocytogenes

Patskovsky, Y., Ho, J., Toro, R., Gilmore, M., Miller, S., Groshong, C., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 55.85 kDa 
• Atom Count: 3,801 
• Modelled Residue Count: 459 
• Deposited Residue Count: 492 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2	A, B	246	Listeria monocytogenes serotype 4b str. F2365	Mutation(s): 0  Gene Names: ispD2, LMOf2365_1100 EC: 2.7.7.60
UniProt
Find proteins for Q720Y7 (Listeria monocytogenes serotype 4b (strain F2365)) Explore Q720Y7  Go to UniProtKB:  Q720Y7

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.277 
• R-Value Work: 0.241 
• R-Value Observed: 0.242 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 157.202	α = 90
b = 45.938	β = 108.89
c = 79.007	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SHELX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-11-18 
Deposition Author(s): Patskovsky, Y., Ho, J., Toro, R., Gilmore, M., Miller, S., Groshong, C., Sauder, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2008-11-18
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2012-10-24
  Changes: Structure summary
• Version 1.3: 2018-11-14
  Changes: Data collection, Structure summary
• Version 1.4: 2021-02-10
  Changes: Database references, Structure summary
• Version 1.5: 2023-12-27
  Changes: Data collection, Database references