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Crystal structure of thymidine kinase from Herpes simplex virus type 1 in complex with N-methyl-DHBT
3F0T
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 72850.05
    Molecule: Thymidine kinase
    Polymer: 1 Type: protein Length: 332
    Chains: A, B
    EC#: 2.7.1.21   
    Fragment: Residues 45-376
    Organism: Herpes simplex virus (type 1 / strain 17)
    Gene Names: TK UL23
    UniProtKB: Protein Feature View | Search PDB | P03176  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Herpes simplex virus (type 1 / strain 17)   Taxonomy   Common Name: Virus Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1E2H  Thymidine kinase from herpes simplex virus type 1 in the apo form 
    1E2P  Thymidine kinase from herpes simplex virus type 1 complexed with DHBT 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NCV
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    NCV C10 H16 N2 O4
    N-Methyl-6-(1,3-dihydroxy-isobutyl)thymine
    NCV:3F0T
    SO4
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    SO4 O4 S
    SULFATE ION
     
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Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Pernot, L.,  Perozzo, R.,  Westermaier, Y.,  Martic, M.,  Ametamey, S.,  Scapozza, L.

    Deposition:   2008-10-26
    Release:   2009-11-03
    Last Modified (REVDAT):   2013-10-02
     
  •   Revision History    Hide
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    2013-10-02
    Entry authorship
    2011-08-03
    Citation
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.00
    R-Value: 0.211 (obs.)
    R-Free: 0.228
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 113.00 α = 90.00 
    b = 117.36 β = 90.00 
    c = 107.76 γ = 90.00