3EMM

X-ray structure of protein from Arabidopsis thaliana AT1G79260 with Bound Heme


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 3EMM

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 19186.51

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein At1g79260 A 166 Arabidopsis thaliana Gene Name(s): At1g79260 YUP8H12R.14
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.170
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 59.75 α = 90.00
b = 79.73 β = 90.00
c = 36.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-09-24
  • Released Date: 2008-10-14
  • Deposition author(s): Bianchetti, C.M., Bingman, C.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • Version 1_0: 2008-10-14

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description