Structure of hsDDB1-drDDB2 bound to a 16 bp abasic site containing DNA-duplex DOI:10.2210/pdb3ei2/pdb   NDB ID: PD1185

3EI2   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: DNA Binding Protein/dna Structure Weight: 182669.22 Molecule: DNA damage-binding protein 1 Polymer: 1 Type: protein Length: 1158 Chains: A Organism Homo sapiens Gene Names DDB1 XAP1 UniProtKB:   Protein Feature View | Search PDB | Q16531     Molecule: DNA damage-binding protein 2 Polymer: 2 Type: protein Length: 383 Chains: B Fragment: residues (-8)-427 Organism Danio rerio Gene Names ddb2 si:dkey-45f10.3 UniProtKB:   Protein Feature View | Search PDB | Q2YDS1     Molecule: 5'-D(*DAP*DAP*DAP*DTP*DGP*DAP*DAP*DTP*(3DR)P*DAP*DAP*DGP*DCP*DAP*DGP*DG)-3' Polymer: 3 Type: dna Length: 16 Chains: G Molecule: 5'-D(*DCP*DCP*DTP*DGP*DCP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DTP*DT)-3' Polymer: 4 Type: dna Length: 16 Chains: H     Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Trichoplusia ni   Polymer: 2 Scientific Name: Danio rerio   Taxonomy   Common Name: Zebrafish Expression System: Trichoplusia ni   Polymer: 3 Scientific Name: Synthetic construct   Taxonomy     Polymer: 4 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 3EI1    3EI3    3EI4        Ligand Chemical Component Hide Identifier Formula Name Interactions PG4 Search  Download  C8 H18 O5 TETRAETHYLENE GLYCOL   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type 3DR Search  C5 H11 O6 P dnaLinking     External Domain Annotations Hide Pfam Classification: 4 Domains - data from Pfam   GO Terms: 20 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: PD1185     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Scrima, A.,  Thoma, N.H. Deposition:   2008-09-15 Release:   2009-01-20     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.60 R-Value: 0.223 (obs.) R-Free: 0.268 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 113.21 α = 90.00  b = 123.48 β = 90.00  c = 159.79 γ = 90.00