Candida glabrata Dihydrofolate Reductase complexed with 2,4-diamino-5-[3-methyl-3-(3-methoxy-5-(4-methylphenyl)phenyl)prop-1-ynyl]-6-methylpyrimidine(UCP111D4M) and NADPH
3EEK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 55090.79
    Molecule: Dihydrofolate reductase
    Polymer: 1 Type: protein Length: 227
    Chains: A, B
    Organism: Candida glabrata
    Gene Name: CAGL0J03894g
    UniProtKB: Search PDB | Q6FPH0   Protein Feature View
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Candida glabrata   Taxonomy   Common Name: Yeast Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3EEJ    
    3EEL    
    3EEM    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    53S
    Search 
    Download 
    53S C23 H24 N4 O
    5-[(3R)-3-(5-methoxy-4'-methylbiphenyl-3- yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4- diamine
    NDP
    Search 
    Download 
    NDP C21 H30 N7 O17 P3
    NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    53S
    Search 
    Download 
    53S
    N/Ain BindingDB
    IC50: 0.61 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Liu, J.,  Anderson, A.

    Deposition:   2008-09-04
    Release:   2009-08-18
    Last Modified (REVDAT):   2013-11-20
     
  •   Revision History    Hide
    Mouse over text for details
    2013-11-20
    Non-polymer description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.03
    R-Value: 0.178 (obs.)
    R-Free: 0.243
    Space Group: P 41
    Unit Cell:
      Length [Å] Angles [°]
    a = 42.75 α = 90.00 
    b = 42.75 β = 90.00 
    c = 230.45 γ = 90.00