3E5H

Crystal Structure of Rab28 GTPase in the Active (GppNHp-bound) Form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.151

Literature

Macromolecules
Sequence Display for 3E5H

Classification: SIGNALING PROTEIN

Total Structure Weight: 20711.66

Macromolecule Entities
Molecule Chains Length Organism Details
Ras-related protein Rab-28 A 178 Homo sapiens Fragment: Rab28 (UNP residues 11-184)
Gene Name(s): RAB28 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GNP
Query on GNP

A PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.151
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 79.75 α = 90.00
b = 79.75 β = 90.00
c = 66.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-08-13
  • Released Date: 2008-08-26
  • Deposition author(s): Lee, S.H., Baek, K., Li, Y., Dominguez, R.
  • This entry supercedes: 2HY4

Revision History

  • Version 1_0: 2008-08-26

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_2: 2017-10-25

    Type: Refinement description