3DSD

Crystal structure of P. furiosus Mre11-H85S bound to a branched DNA and manganese


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 3DSD

Classification: Hydrolase / DNA

Total Structure Weight: 89953.08


Macromolecule Entities
Molecule Chains Length Organism Details
DNA double-strand break repair protein mre11 A, B 349 Pyrococcus furiosus EC#: 3.1 IUBMB
Fragment: pfMre11 Nuclease domain
Mutation: H85S
Gene Name(s): mre11 PF1166
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DAP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DTP*DTP*DGP*DCP*DTP*DTP*DGP*DTP*DGP*DGP*DAP*DTP*DA)-3') C 26 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.200
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 77.16 α = 90.00
b = 88.13 β = 90.00
c = 137.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-11
  • Released Date: 2008-10-14
  • Deposition author(s): Williams, R.S., Moiani, D., Tainer, J.A.

Revision History

  • Version 1_0: 2008-10-14

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-01-11

    Type: Other