3DBC

Crystal structure of an activated (Thr->Asp) Polo-like kinase 1 (Plk1) catalytic domain in complex with Compound 257

Structural Biology Knowledgebase: 3DBC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.238

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3DBC

Classification: TRANSFERASE

Total Structure Weight: 36392.79

Macromolecule Entities
Molecule Chains Length Organism Details
Polo-like kinase 1 A 317 Danio rerio EC#: 2.7.11.21 IUBMB
Fragment: Plk1 kinase domain
Mutation: T196D
Gene Name(s): plk1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2FR
Query on 2FR

A 3-[3-(3-methyl-6-{[(1S)-1-phenylethyl]amino}- 1H-pyrazolo[4,3-c]pyridin-1-yl)phenyl]propanamide
3- c]pyridin-1-yl]-phenyl}-propionamide, (Synonym)
C24 H25 N5 O
ZFGCLYUGFRNYFE-INIZCTEOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.238
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 135.07 α = 90.00
b = 135.07 β = 90.00
c = 135.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-31
  • Released Date: 2008-10-07
  • Deposition author(s): Elling, R.A., Zhu, J., Barr, K.J., Romanowski, M.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4