3D2P

Crystal structure of N-acetylglutamate synthase from Neisseria gonorrhoeae complexed with coenzyme A and L-arginine

Structural Biology Knowledgebase: 3D2P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3D2P

Classification: TRANSFERASE

Total Structure Weight: 100357.44

Macromolecule Entities
Molecule Chains Length Organism Details
Putative acetylglutamate synthase A, B 456 Neisseria gonorrhoeae EC#: 2.3.1.1 IUBMB
Mutation: V312I, D336N, P427S
Gene Name(s): argA NGO_0027

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COA
Query on COA

A, B COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ARG
Query on ARG

A, B ARGININE
C6 H15 N4 O2
ODKSFYDXXFIFQN-BYPYZUCNSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.214
  • Space Group: P 3 1 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.05 α = 90.00
b = 107.05 β = 90.00
c = 185.47 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-08
  • Released Date: 2008-12-23
  • Deposition author(s): Shi, D., Min, L., Jin, Z., Allewell, N.M., Tuchman, M.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4