3CFT

Crystal structure of human transthyretin in complex with 1-amino-5-naphthalene sulfonate

Structural Biology Knowledgebase: 3CFT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 3CFT

Classification: TRANSPORT PROTEIN

Total Structure Weight: 26593.01

Macromolecule Entities
Molecule Chains Length Organism Details
Transthyretin A, B 118 Homo sapiens Fragment: UNP residues 30-147
Gene Name(s): TTR Gene View PALB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5NS
Query on 5NS

A, B 5-aminonaphthalene-1-sulfonic acid
C10 H9 N O3 S
DQNAQOYOSRJXFZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
5NS Kd: 64000 nM (100) BindingDB

Kd: 64000 nM  BindingMOAD
Kd: 64000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.191
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.96 α = 90.00
b = 85.61 β = 90.00
c = 63.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-03-04
  • Released Date: 2009-03-03
  • Deposition author(s): Lima, L.-M.T.R., Foguel, D., Polikarpov, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4