Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2
DOI:10.2210/pdb3cfr/pdb   NDB ID: PD1106
3CFR
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 115604.28
    Molecule: DNA (5'-D(*DTP*DCP*DAP*DAP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3')
    Polymer: 1 Type: dna Length: 18
    Chains: T
    Details: TEMPLATE strand
    Molecule: DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*(DOC))-3')
    Polymer: 2 Type: dna Length: 13
    Chains: P
    Details: PRIMER strand
    Molecule: DNA polymerase
    Polymer: 3 Type: protein Length: 909
    Chains: A
    EC#: 2.7.7.7   
    Mutation: L561A, S565G, Y567A
    Organism: Enterobacteria phage RB69
    Gene Name: 43
    UniProtKB: Protein Feature View | Search PDB | Q38087  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Bacteriophage rb69   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1IG9   Wild type RB69 DNA Polymerase teranry complex 
    1IH7   Wild type RB69 DNA Polymerase APO form 
    3CFO   Triple Mutant APO structure 
    3CFP   Structure of the replicating complex of a POL Alpha family DNA Polymerase,ternary complex 1 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
    CL
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    CL Cl
    CHLORIDE ION
    TTP
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    TTP C10 H17 N2 O14 P3
    THYMIDINE-5'-TRIPHOSPHATE
    TTP:3CFR
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    DOC
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    DOC C9 H14 N3 O6 P DC dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD1106
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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