3C0O
Crystal structure of the proaerolysin mutant Y221G complexed with mannose-6-phosphate
- PDB DOI: https://doi.org/10.2210/pdb3C0O/pdb
- Classification: TOXIN
- Organism(s): Aeromonas hydrophila
- Expression System: Aeromonas salmonicida
- Mutation(s): Yes 
- Membrane Protein: Yes  mpstruc
- Deposited: 2008-01-21 Released: 2008-02-12 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.274 
- R-Value Work: 0.203 
- R-Value Observed: 0.207 
This is version 1.5 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Aerolysin | 470 | Aeromonas hydrophila | Mutation(s): 1  Gene Names: aerA Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P09167 (Aeromonas hydrophila) Explore P09167  Go to UniProtKB:  P09167 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09167 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
M6P Query on M6P | D [auth A], E [auth B] | 6-O-phosphono-alpha-D-mannopyranose C6 H13 O9 P NBSCHQHZLSJFNQ-PQMKYFCFSA-N | |||
ACT Query on ACT | C [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.274 
- R-Value Work: 0.203 
- R-Value Observed: 0.207 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 70.954 | α = 90 |
b = 90.78 | β = 90 |
c = 165.805 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2008-02-12  Deposition Author(s): Pernot, L., Schiltz, M., Thurnheer, S., Burr, S.E., van der Goot, G.
Revision History (Full details and data files)
- Version 1.0: 2008-02-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2013-10-02
Changes: Database references - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2021-11-10
Changes: Database references, Structure summary - Version 1.5: 2023-11-01
Changes: Data collection, Refinement description