3BN9

Crystal Structure of MT-SP1 in complex with Fab Inhibitor E2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 3BN9

Classification: HYDROLASE

Total Structure Weight: 154648.53

Macromolecule Entities
Molecule Chains Length Organism Details
Membrane-type serine protease 1 A, B 241 Homo sapiens EC#: 3.4.21.109 IUBMB
Fragment: Peptidase S1 domain
Mutation: C122S
Gene Name(s): ST14 Gene View PRSS14 SNC19 TADG15
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
E2 Fab Light Chain C, E 214 Homo sapiens
E2 Fab Heavy Chain D, F 257 Homo sapiens EC#: 3.4.19.13 IUBMB
Gene Name(s): IGHV3-23
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

C, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D, E 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.223
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 48.63 α = 90.00
b = 163.28 β = 90.00
c = 201.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-13
  • Released Date: 2008-09-09
  • Deposition author(s): Farady, C.J., Schneider, E.L., Egea, P.F., Goetz, D.H., Craik, C.S.

Revision History

  • Version 1_0: 2008-09-09

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance