3BBH

M. jannaschii Nep1 complexed with Sinefungin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 3BBH

Classification: TRANSFERASE

Total Structure Weight: 49566.49

Macromolecule Entities
Molecule Chains Length Organism Details
Ribosome biogenesis protein NEP1-like A, B 205 Methanocaldococcus jannaschii EC#: 2.1.1 IUBMB
Gene Name(s): nep1 MJ0557
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SFG
Query on SFG

A, B SINEFUNGIN
ADENOSYL-ORNITHINE (Synonym)
C15 H23 N7 O5
LMXOHSDXUQEUSF-YECHIGJVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.214
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 84.60 α = 90.00
b = 89.56 β = 90.00
c = 94.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-09
  • Released Date: 2008-02-05
  • Deposition author(s): Taylor, A.B., Meyer, B., Leal, B.Z., Kotter, P., Hart, P.J., Entian, K.-D., Wohnert, J.

Revision History

  • Version 1_0: 2008-02-05

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance