3BAP

Crystal Structure of the 25 kDa Subunit of Human Cleavage Factor Im

Structural Biology Knowledgebase: 3BAP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3BAP

Classification: RNA BINDING PROTEIN

Total Structure Weight: 26539.19

Macromolecule Entities
Molecule Chains Length Organism Details
Cleavage and polyadenylation specificity factor subunit 5 A 227 Homo sapiens Gene Name(s): NUDT21 Gene View CFIM25 CPSF25 CPSF5

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.226
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 80.11 α = 90.00
b = 80.11 β = 90.00
c = 72.21 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-08
  • Released Date: 2008-02-19
  • Deposition author(s): Coseno, M., Doublie , S.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4