3B3K

Crystal structure of the complex between PPARgamma and the full agonist LT175

Structural Biology Knowledgebase: 3B3K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.316
  • R-Value Work: 0.237

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3B3K

Classification: TRANSCRIPTION

Total Structure Weight: 65380.17

Macromolecule Entities
Molecule Chains Length Organism Details
Peroxisome proliferator-activated receptor gamma A, B 286 Homo sapiens Fragment: UNP residues 223-504
Gene Name(s): PPARG Gene View NR1C3

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LRG
Query on LRG

A (2S)-2-(biphenyl-4-yloxy)-3-phenylpropanoic acid
C21 H18 O3
TZTPJJNNACUQQR-FQEVSTJZSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LRG EC50: 480 - 5930 nM (99 - 100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.316
  • R-Value Work: 0.237
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.14 α = 90.00
b = 61.57 β = 103.40
c = 118.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-22
  • Released Date: 2008-10-28
  • Deposition author(s): Pochetti, G., Montanari, R., Mazza, F., Loiodice, F., Fracchiolla, G., Crestani, M., Godio, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4