Fragment-based approach to the design of ligands targeting a novel site in HIV-1 integrase DOI:10.2210/pdb3ao1/pdb

3AO1   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Viral Protein/transferase Inhibitor Structure Weight: 36564.67 Molecule: POL polyprotein Polymer: 1 Type: protein Length: 163 Chains: A, B Fragment: Integrase CATALYTIC CORE DOMAIN, 765-927 Mutation: C56S, W131D, F139D, F185H Organism Human immunodeficiency virus 1 Gene Name pol UniProtKB:   Protein Feature View | Search PDB | Q72498         Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 3AO2    3AO3    3AO4    3AO5    3l3u  HIV-1 integrase core domain  3OVN        Ligand Chemical Component Hide Identifier Formula Name Interactions BZX Search  Download  C7 H6 O3 1,3-benzodioxol-5-ol   Ligand Explorer CD Search  Download  Cd CADMIUM ION   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) BZX Search  Download  N/A in BindingDB Kd: 5500000 nM - data from BindingMOAD   Kd: 5500000 nM - data from PDBbind       External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Wielens, J.,  Parker, M.W.,  Chalmers, D.K.,  Scanlon, M.J. Deposition:   2010-09-17 Release:   2011-03-09     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.90 R-Value: 0.219 (obs.) R-Free: 0.268 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 60.59 α = 90.00  b = 62.00 β = 90.00  c = 81.76 γ = 90.00