Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8 DOI:10.2210/pdb2zdq/pdb

2ZDQ   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ligase Structure Weight: 70771.14 Molecule: D-alanine--D-alanine ligase Polymer: 1 Type: protein Length: 319 Chains: A, B EC#: 6.3.2.4    Organism Thermus thermophilus HB8 Gene Names ddl TTHA1587 UniProtKB:   Protein Feature View | Search PDB | Q5SHZ3         Source Hide Polymer: 1 Scientific Name: Thermus thermophilus   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 2YZG  Free form of Ligase  2YZM  Cocrystal with ligand      Ligand Chemical Component Hide Identifier Formula Name Interactions ATP Search  Download  C10 H16 N5 O13 P3 ADENOSINE-5'-TRIPHOSPHATE   Ligand Explorer DAL Search  Download  C3 H7 N O2 D-ALANINE   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 5 Domains - data from Pfam   GO Terms: 12 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Kitamuta, Y.,  Yokoyama, S.,  Kuramitsu, S.,  RIKEN Structural Genomics/Proteomics Initiative Deposition:   2007-11-27 Release:   2008-05-27 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.30 R-Value: 0.231 (obs.) R-Free: 0.266 Space Group: P 41 21 2 Unit Cell:   Length [Å] Angles [°] a = 95.05 α = 90.00  b = 95.05 β = 90.00  c = 192.01 γ = 90.00