2YJK

STRUCTURE OF DPS FROM MICROBACTERIUM ARBORESCENS IN THE HIGH IRON FORM

Structural Biology Knowledgebase: 2YJK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2YJK

Classification: METAL-BINDING PROTEIN

Total Structure Weight: 208540.58

Macromolecule Entities
Molecule Chains Length Organism Details
AFP A, B, C..., D, E, F, G, H, I, J, K, LA, B, C, D, E, F, G, H, I, J, K, L 161 Microbacterium arborescens Gene Name(s): afp mas0001

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OFE
Query on OFE

A, B, C, D, E, F, G, H, J, K, L Iron(II) oxide
ferrous oxide (Synonym)
Fe O
UQSXHKLRYXJYBZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

B, C, D, I, J, L FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.170
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.58 α = 90.00
b = 92.05 β = 96.04
c = 128.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-19
  • Released Date: 2011-06-01
  • Deposition author(s): Zeth, K., Buecheler, R., Boland, W.

Revision History

  • 2011-10-12
    Type: Version format compliance | Details: REMARK 4
  • 2011-10-12
    Type: Citation | Details: JRNL