2YHX

SEQUENCING A PROTEIN BY X-RAY CRYSTALLOGRAPHY. II. REFINEMENT OF YEAST HEXOKINASE B CO-ORDINATES AND SEQUENCE AT 2.1 ANGSTROMS RESOLUTION

Structural Biology Knowledgebase: 2YHX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Work:

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2YHX

Classification: TRANSFERASE(PHOSPHORYL ALCOHOL ACCEPTOR)

Total Structure Weight: 46149.41

Macromolecule Entities
Molecule Chains Length Organism Details
HEXOKINASE B A 457 Saccharomyces cerevisiae EC#: 2.7.1.1 IUBMB
Gene Name(s): HXK2 HEX1 HKB YGL253W NRB486
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OTG
Query on OTG

A ORTHO-TOLUOYLGLUCOSAMINE
C14 H19 N O6
ZWRASUMSHKKCJN-SKENRDBWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
A L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed:
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 166.50 α = 90.00
b = 59.20 β = 90.00
c = 58.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1978-03-20
  • Released Date: 1978-05-23
  • Deposition author(s): Steitz, T.A., Anderson, C.M., Stenkamp, R.E.
  • Previous versions: 1YHX

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4