2YBV

STRUCTURE OF RUBISCO FROM THERMOSYNECHOCOCCUS ELONGATUS

Structural Biology Knowledgebase: 2YBV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2YBV

Classification: LYASE

Total Structure Weight: 537266.13

Macromolecule Entities
Molecule Chains Length Organism Details
RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN A, C, E..., G, I, K, M, OA, C, E, G, I, K, M, O 475 Thermosynechococcus elongatus EC#: 4.1.1.39 IUBMB
Gene Name(s): cbbL rbcL tll1506
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL SUBUNIT B, D, F..., H, J, L, N, PB, D, F, H, J, L, N, P 118 Thermosynechococcus elongatus EC#: 4.1.1.39 IUBMB
Gene Name(s): rbcS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, C, E, G, I, K, M, O CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.196
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 115.48 α = 90.00
b = 163.47 β = 108.96
c = 163.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-10
  • Released Date: 2012-03-28
  • Deposition author(s): Terlecka, B., Wilhelmi, V., Bialek, W., Gubernator, B., Szczepaniak, A., Hofmann, E.

Revision History

No revisions since initial release