Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876) DOI:10.2210/pdb2ybb/pdb EMDataBank  :1876

2YBB   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Oxidoreductase Structure Weight: 1125234.52 Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 1 Polymer: 1 Type: protein Length: 438 Chains: 1 EC#: 1.6.99.5    Details: NQO1 (51KDA) Organism Thermus thermophilus HB8 Gene Names nqo1 TTHA0089 UniProtKB:   Protein Feature View | Search PDB | Q56222     Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 2 Polymer: 2 Type: protein Length: 181 Chains: 2 EC#: 1.6.99.5    Details: NQO2 (24KDA) Organism Thermus thermophilus HB8 Gene Names nqo2 TTHA0088 UniProtKB:   Protein Feature View | Search PDB | Q56221     Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 3 Polymer: 3 Type: protein Length: 783 Chains: 3 EC#: 1.6.99.5    Details: NQO3 (75KDA) Organism Thermus thermophilus HB8 Gene Names nqo3 TTHA0090 UniProtKB:   Protein Feature View | Search PDB | Q56223     Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 4 Polymer: 4 Type: protein Length: 409 Chains: 4 EC#: 1.6.99.5    Details: NQO4 (49KDA) Organism Thermus thermophilus HB8 Gene Names nqo4 TTHA0087 UniProtKB:   Protein Feature View | Search PDB | Q56220     Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 5 Polymer: 5 Type: protein Length: 207 Chains: 5 EC#: 1.6.99.5    Details: NQO5 (30KDA) Organism Thermus thermophilus HB8 Gene Names nqo5 TTHA0086 UniProtKB:   Protein Feature View | Search PDB | Q56219     Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 6 Polymer: 6 Type: protein Length: 181 Chains: 6 EC#: 1.6.99.5    Details: NQO6 (PSST) Organism Thermus thermophilus HB8 Gene Names nqo6 TTHA0085 UniProtKB:   Protein Feature View | Search PDB | Q56218     Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 15 Polymer: 7 Type: protein Length: 129 Chains: 7 EC#: 1.6.99.5    Details: NQO15 Organism Thermus thermophilus HB8 Gene Names nqo15 TTHA0496 UniProtKB:   Protein Feature View | Search PDB | Q5SKZ7     Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 9 Polymer: 8 Type: protein Length: 182 Chains: 8 EC#: 1.6.99.5    Details: NQO9 (TYKY) Organism Thermus thermophilus HB8 Gene Names nqo9 TTHA0092 UniProtKB:   Protein Feature View | Search PDB | Q56224     Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL Polymer: 9 Type: protein Length: 446 Chains: A, a EC#: 1.10.2.2    Organism Bos taurus Gene Name UQCRC1 UniProtKB:   Protein Feature View | Search PDB | P31800     Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL Polymer: 10 Type: protein Length: 439 Chains: B, b EC#: 1.10.2.2    Organism Bos taurus Gene Name UQCRC2 UniProtKB:   Protein Feature View | Search PDB | P23004     Molecule: CYTOCHROME B Polymer: 11 Type: protein Length: 379 Chains: C, c EC#: 1.10.2.2    Organism Bos taurus Gene Names MT-CYB COB CYTB MTCYB UniProtKB:   Protein Feature View | Search PDB | P00157     Molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL Polymer: 12 Type: protein Length: 241 Chains: D, d EC#: 1.10.2.2    Fragment: RESIDUES 85-325 Organism Bos taurus Gene Name CYC1 UniProtKB:   Protein Feature View | Search PDB | P00125     Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL Polymer: 13 Type: protein Length: 196 Chains: E, e EC#: 1.10.2.2    Organism Bos taurus Gene Name UQCRFS1 UniProtKB:   Protein Feature View | Search PDB | P13272     Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 7 Polymer: 14 Type: protein Length: 110 Chains: F, f EC#: 1.10.2.2    Mutation: YES Organism Bos taurus Gene Name UQCRB UniProtKB:   Protein Feature View | Search PDB | P00129     Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 8 Polymer: 15 Type: protein Length: 81 Chains: G, g EC#: 1.10.2.2    Organism Bos taurus Gene Name UQCRQ UniProtKB:   Protein Feature View | Search PDB | P13271     Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL Polymer: 16 Type: protein Length: 78 Chains: H, h EC#: 1.10.2.2    Organism Bos taurus Gene Name UQCRH UniProtKB:   Protein Feature View | Search PDB | P00126     Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL Polymer: 17 Type: protein Length: 65 Chains: I, i EC#: 1.10.2.2    Organism Bos taurus Gene Name UQCRFS1 UniProtKB:   Protein Feature View | Search PDB | P13272   Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 9 Polymer: 18 Type: protein Length: 62 Chains: J, j EC#: 1.10.2.2    Organism Bos taurus Gene Name UQCR10 UniProtKB:   Protein Feature View | Search PDB | P00130     Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 10 Polymer: 19 Type: protein Length: 56 Chains: K, k EC#: 1.10.2.2    Organism Bos taurus Gene Names UQCR11 UQCR UniProtKB:   Protein Feature View | Search PDB | P07552     Molecule: CYTOCHROME C OXIDASE SUBUNIT 1 Polymer: 20 Type: protein Length: 514 Chains: L EC#: 1.9.3.1    Organism Bos taurus Gene Names MT-CO1 COI COXI MTCO1 UniProtKB:   Protein Feature View | Search PDB | P00396     Molecule: CYTOCHROME C OXIDASE SUBUNIT 2 Polymer: 21 Type: protein Length: 227 Chains: M EC#: 1.9.3.1    Organism Bos taurus Gene Names MT-CO2 COII COXII MTCO2 UniProtKB:   Protein Feature View | Search PDB | P68530     Molecule: CYTOCHROME C OXIDASE SUBUNIT 3 Polymer: 22 Type: protein Length: 261 Chains: N EC#: 1.9.3.1    Organism Bos taurus Gene Names MT-CO3 COIII COXIII MTCO3 UniProtKB:   Protein Feature View | Search PDB | P00415     Molecule: CYTOCHROME C OXIDASE SUBUNIT 4 ISOFORM 1, MITOCHONDRIAL Polymer: 23 Type: protein Length: 147 Chains: O EC#: 1.9.3.1    Organism Bos taurus Gene Names COX4I1 COX4 UniProtKB:   Protein Feature View | Search PDB | P00423     Molecule: CYTOCHROME C OXIDASE SUBUNIT 5A, MITOCHONDRIAL Polymer: 24 Type: protein Length: 109 Chains: P EC#: 1.9.3.1    Organism Bos taurus Gene Name COX5A UniProtKB:   Protein Feature View | Search PDB | P00426     Molecule: CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL Polymer: 25 Type: protein Length: 98 Chains: Q EC#: 1.9.3.1    Organism Bos taurus Gene Name COX5B UniProtKB:   Protein Feature View | Search PDB | P00428     Molecule: CYTOCHROME C OXIDASE POLYPEPTIDE VIA, CYTOCHROME C OXIDASE POLYPEPTIDE VB Polymer: 26 Type: protein Length: 84 Chains: R EC#: 1.9.3.1    Organism Bos taurus Gene Names COX6A2 COX6A UniProtKB:   Protein Feature View | Search PDB | P07471     Molecule: CYTOCHROME C OXIDASE SUBUNIT 6B1 Polymer: 27 Type: protein Length: 85 Chains: S EC#: 1.9.3.1    Organism Bos taurus Gene Names COX6B1 COX6B UniProtKB:   Protein Feature View | Search PDB | P00429     Molecule: CYTOCHROME C OXIDASE SUBUNIT 6C Polymer: 28 Type: protein Length: 73 Chains: T EC#: 1.9.3.1    Organism Bos taurus Gene Name COX6C UniProtKB:   Protein Feature View | Search PDB | P04038     Molecule: CYTOCHROME C OXIDASE SUBUNIT 7A1, MITOCHONDRIAL Polymer: 29 Type: protein Length: 59 Chains: U EC#: 1.9.3.1    Organism Bos taurus Gene Names COX7A1 COX7A COX7AH UniProtKB:   Protein Feature View | Search PDB | P07470     Molecule: CYTOCHROME C OXIDASE SUBUNIT 7B, MITOCHONDRIAL Polymer: 30 Type: protein Length: 56 Chains: V EC#: 1.9.3.1    Organism Bos taurus Gene Name COX7B UniProtKB:   Protein Feature View | Search PDB | P13183     Molecule: CYTOCHROME C OXIDASE SUBUNIT 7C, MITOCHONDRIAL Polymer: 31 Type: protein Length: 47 Chains: W EC#: 1.9.3.1    Organism Bos taurus Gene Names COX7C COX7CP1 UniProtKB:   Protein Feature View | Search PDB | P00430     Molecule: CYTOCHROME C OXIDASE SUBUNIT 8B, MITOCHONDRIAL Polymer: 32 Type: protein Length: 46 Chains: X EC#: 1.9.3.1    Organism Bos taurus Gene Names COX8B COX8H UniProtKB:   Protein Feature View | Search PDB | P10175     Molecule: CYTOCHROME C Polymer: 33 Type: protein Length: 104 Chains: Y Organism Bos taurus Gene Names CYCS CYC UniProtKB:   Protein Feature View | Search PDB | P62894     Molecule: NADH\: UBIQUINONE OXIDOREDUCTASE, MEMBRANE SUBUNIT L, Polymer: 34 Type: protein Length: 474 Chains: m EC#: 1.6.5.3    Details: SUBUNIT NUOL (CHAIN5) Organism Escherichia coli BL21 Molecule: NADH\: UBIQUINONE OXIDOREDUCTASE, MEMBRANE SUBUNIT M, Polymer: 35 Type: protein Length: 391 Chains: n EC#: 1.6.5.3    Details: SUBUNIT NUOM (CHAIN4) Organism Escherichia coli BL21 Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT N Polymer: 36 Type: protein Length: 378 Chains: o EC#: 1.6.5.3    Details: SUBUNIT NUON (CHAIN2) Organism Escherichia coli BL21 Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT K Polymer: 37 Type: protein Length: 281 Chains: p EC#: 1.6.5.3    Details: SUBUNITS NUOA, J AND K (CHAIN3,6 AND 4L) Organism Escherichia coli BL21     Source Hide Polymer: 1 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 2 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 3 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 4 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 5 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 6 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 7 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 8 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 9 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 10 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 11 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 12 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 13 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 14 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 15 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 16 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 17 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 18 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 19 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 20 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 21 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 22 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 23 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 24 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 25 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 26 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 27 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 28 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 29 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 30 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 31 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 32 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 33 Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle   Polymer: 34 Scientific Name: Escherichia coli   Taxonomy     Polymer: 35 Scientific Name: Escherichia coli   Taxonomy     Polymer: 36 Scientific Name: Escherichia coli   Taxonomy     Polymer: 37 Scientific Name: Escherichia coli   Taxonomy         Ligand Chemical Component Hide Identifier Formula Name Interactions CA Search  Download  Ca CALCIUM ION   Ligand Explorer CDL Search  Download  C81 H156 O17 P2 CARDIOLIPIN   Ligand Explorer CU Search  Download  Cu COPPER (II) ION   Ligand Explorer FES Search  Download  Fe2 S2 FE2/S2 (INORGANIC) CLUSTER   Ligand Explorer FMN Search  Download  C17 H21 N4 O9 P FLAVIN MONONUCLEOTIDE   Ligand Explorer HEA Search  Download  C49 H56 Fe N4 O6 HEME-A   Ligand Explorer HEC Search  Download  C34 H34 Fe N4 O4 HEME C   Ligand Explorer HEM Search  Download  C34 H32 Fe N4 O4 PROTOPORPHYRIN IX CONTAINING FE   Ligand Explorer MG Search  Download  Mg MAGNESIUM ION   Ligand Explorer NAI Search  Download  C21 H29 N7 O14 P2 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE   Ligand Explorer SF4 Search  Download  Fe4 S4 IRON/SULFUR CLUSTER   Ligand Explorer SMA Search  Download  C30 H42 O7 STIGMATELLIN A   Ligand Explorer UQ1 Search  Download  C14 H18 O4 UBIQUINONE-1   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type UNK Search  C4 H9 N O2 lPeptideLinking     External Domain Annotations Hide Pfam Classification: 51 Domains - data from Pfam   GO Terms: 244 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Electron Microscopy Database Hide EMDataBank  :  1876     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Althoff, T.,  Mills, D.J.,  Popot, J.-L.,  Kuehlbrandt, W. Deposition:   2011-03-02 Release:   2011-10-19 Last Modified (REVDAT):   2012-03-28     Revision History    Hide Mouse over text for details 2012-03-28 Other     Experimental Details Hide Method:   ELECTRON MICROSCOPY Exp. Data: EM Resolution [Å]: 19.0 Aggregation State: PARTICLE Symmetry Type: MIXED SYMMETRY Reconstruction Method: SINGLE PARTICLE Specimen Type: VITREOUS ICE     Molecule of the Month Hide Cytochrome bc1 Complex I Cytochrome c Cytochrome c Oxidase Aconitase and Iron Regulatory Protein 1