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Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876)
2YBB
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 1125234.52
    Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 1
    Polymer: 1 Type: protein Length: 438
    Chains: 1
    EC#: 1.6.99.5   
    Details: NQO1 (51KDA)
    Organism Thermus thermophilus HB8
    Gene Names nqo1 TTHA0089
    UniProtKB:   Protein Feature View | Search PDB | Q56222  
    Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 2
    Polymer: 2 Type: protein Length: 181
    Chains: 2
    EC#: 1.6.99.5   
    Details: NQO2 (24KDA)
    Organism Thermus thermophilus HB8
    Gene Names nqo2 TTHA0088
    UniProtKB:   Protein Feature View | Search PDB | Q56221  
    Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 3
    Polymer: 3 Type: protein Length: 783
    Chains: 3
    EC#: 1.6.99.5   
    Details: NQO3 (75KDA)
    Organism Thermus thermophilus HB8
    Gene Names nqo3 TTHA0090
    UniProtKB:   Protein Feature View | Search PDB | Q56223  
    Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 4
    Polymer: 4 Type: protein Length: 409
    Chains: 4
    EC#: 1.6.99.5   
    Details: NQO4 (49KDA)
    Organism Thermus thermophilus HB8
    Gene Names nqo4 TTHA0087
    UniProtKB:   Protein Feature View | Search PDB | Q56220  
    Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 5
    Polymer: 5 Type: protein Length: 207
    Chains: 5
    EC#: 1.6.99.5   
    Details: NQO5 (30KDA)
    Organism Thermus thermophilus HB8
    Gene Names nqo5 TTHA0086
    UniProtKB:   Protein Feature View | Search PDB | Q56219  
    Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 6
    Polymer: 6 Type: protein Length: 181
    Chains: 6
    EC#: 1.6.99.5   
    Details: NQO6 (PSST)
    Organism Thermus thermophilus HB8
    Gene Names nqo6 TTHA0085
    UniProtKB:   Protein Feature View | Search PDB | Q56218  
    Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 15
    Polymer: 7 Type: protein Length: 129
    Chains: 7
    EC#: 1.6.99.5   
    Details: NQO15
    Organism Thermus thermophilus HB8
    Gene Names nqo15 TTHA0496
    UniProtKB:   Protein Feature View | Search PDB | Q5SKZ7  
    Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 9
    Polymer: 8 Type: protein Length: 182
    Chains: 8
    EC#: 1.6.99.5   
    Details: NQO9 (TYKY)
    Organism Thermus thermophilus HB8
    Gene Names nqo9 TTHA0092
    UniProtKB:   Protein Feature View | Search PDB | Q56224  
    Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL
    Polymer: 9 Type: protein Length: 446
    Chains: A, a
    EC#: 1.10.2.2   
    Organism Bos taurus
    Gene Name UQCRC1
    UniProtKB:   Protein Feature View | Search PDB | P31800  
    Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL
    Polymer: 10 Type: protein Length: 439
    Chains: B, b
    EC#: 1.10.2.2   
    Organism Bos taurus
    Gene Name UQCRC2
    UniProtKB:   Protein Feature View | Search PDB | P23004  
    Molecule: CYTOCHROME B
    Polymer: 11 Type: protein Length: 379
    Chains: C, c
    EC#: 1.10.2.2   
    Organism Bos taurus
    Gene Names MT-CYB COB CYTB MTCYB
    UniProtKB:   Protein Feature View | Search PDB | P00157  
    Molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL
    Polymer: 12 Type: protein Length: 241
    Chains: D, d
    EC#: 1.10.2.2   
    Fragment: RESIDUES 85-325
    Organism Bos taurus
    Gene Name CYC1
    UniProtKB:   Protein Feature View | Search PDB | P00125  
    Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL
    Polymer: 13 Type: protein Length: 196
    Chains: E, e
    EC#: 1.10.2.2   
    Organism Bos taurus
    Gene Name UQCRFS1
    UniProtKB:   Protein Feature View | Search PDB | P13272  
    Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 7
    Polymer: 14 Type: protein Length: 110
    Chains: F, f
    EC#: 1.10.2.2   
    Mutation: YES
    Organism Bos taurus
    Gene Name UQCRB
    UniProtKB:   Protein Feature View | Search PDB | P00129  
    Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 8
    Polymer: 15 Type: protein Length: 81
    Chains: G, g
    EC#: 1.10.2.2   
    Organism Bos taurus
    Gene Name UQCRQ
    UniProtKB:   Protein Feature View | Search PDB | P13271  
    Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL
    Polymer: 16 Type: protein Length: 78
    Chains: H, h
    EC#: 1.10.2.2   
    Organism Bos taurus
    Gene Name UQCRH
    UniProtKB:   Protein Feature View | Search PDB | P00126  
    Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL
    Polymer: 17 Type: protein Length: 65
    Chains: I, i
    EC#: 1.10.2.2   
    Organism Bos taurus
    Gene Name UQCRFS1
    UniProtKB:   Protein Feature View | Search PDB | P13272  
    Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 9
    Polymer: 18 Type: protein Length: 62
    Chains: J, j
    EC#: 1.10.2.2   
    Organism Bos taurus
    Gene Name UQCR10
    UniProtKB:   Protein Feature View | Search PDB | P00130  
    Molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 10
    Polymer: 19 Type: protein Length: 56
    Chains: K, k
    EC#: 1.10.2.2   
    Organism Bos taurus
    Gene Names UQCR11 UQCR
    UniProtKB:   Protein Feature View | Search PDB | P07552  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 1
    Polymer: 20 Type: protein Length: 514
    Chains: L
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Names MT-CO1 COI COXI MTCO1
    UniProtKB:   Protein Feature View | Search PDB | P00396  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 2
    Polymer: 21 Type: protein Length: 227
    Chains: M
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Names MT-CO2 COII COXII MTCO2
    UniProtKB:   Protein Feature View | Search PDB | P68530  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 3
    Polymer: 22 Type: protein Length: 261
    Chains: N
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Names MT-CO3 COIII COXIII MTCO3
    UniProtKB:   Protein Feature View | Search PDB | P00415  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 4 ISOFORM 1, MITOCHONDRIAL
    Polymer: 23 Type: protein Length: 147
    Chains: O
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Names COX4I1 COX4
    UniProtKB:   Protein Feature View | Search PDB | P00423  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 5A, MITOCHONDRIAL
    Polymer: 24 Type: protein Length: 109
    Chains: P
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Name COX5A
    UniProtKB:   Protein Feature View | Search PDB | P00426  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL
    Polymer: 25 Type: protein Length: 98
    Chains: Q
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Name COX5B
    UniProtKB:   Protein Feature View | Search PDB | P00428  
    Molecule: CYTOCHROME C OXIDASE POLYPEPTIDE VIA, CYTOCHROME C OXIDASE POLYPEPTIDE VB
    Polymer: 26 Type: protein Length: 84
    Chains: R
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Names COX6A2 COX6A
    UniProtKB:   Protein Feature View | Search PDB | P07471  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 6B1
    Polymer: 27 Type: protein Length: 85
    Chains: S
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Names COX6B1 COX6B
    UniProtKB:   Protein Feature View | Search PDB | P00429  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 6C
    Polymer: 28 Type: protein Length: 73
    Chains: T
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Name COX6C
    UniProtKB:   Protein Feature View | Search PDB | P04038  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 7A1, MITOCHONDRIAL
    Polymer: 29 Type: protein Length: 59
    Chains: U
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Names COX7A1 COX7A COX7AH
    UniProtKB:   Protein Feature View | Search PDB | P07470  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 7B, MITOCHONDRIAL
    Polymer: 30 Type: protein Length: 56
    Chains: V
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Name COX7B
    UniProtKB:   Protein Feature View | Search PDB | P13183  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 7C, MITOCHONDRIAL
    Polymer: 31 Type: protein Length: 47
    Chains: W
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Names COX7C COX7CP1
    UniProtKB:   Protein Feature View | Search PDB | P00430  
    Molecule: CYTOCHROME C OXIDASE SUBUNIT 8B, MITOCHONDRIAL
    Polymer: 32 Type: protein Length: 46
    Chains: X
    EC#: 1.9.3.1   
    Organism Bos taurus
    Gene Names COX8B COX8H
    UniProtKB:   Protein Feature View | Search PDB | P10175  
    Molecule: CYTOCHROME C
    Polymer: 33 Type: protein Length: 104
    Chains: Y
    Organism Bos taurus
    Gene Names CYCS CYC
    UniProtKB:   Protein Feature View | Search PDB | P62894  
    Molecule: NADH\: UBIQUINONE OXIDOREDUCTASE, MEMBRANE SUBUNIT L,
    Polymer: 34 Type: protein Length: 474
    Chains: m
    EC#: 1.6.5.3   
    Details: SUBUNIT NUOL (CHAIN5)
    Organism Escherichia coli BL21
    Molecule: NADH\: UBIQUINONE OXIDOREDUCTASE, MEMBRANE SUBUNIT M,
    Polymer: 35 Type: protein Length: 391
    Chains: n
    EC#: 1.6.5.3   
    Details: SUBUNIT NUOM (CHAIN4)
    Organism Escherichia coli BL21
    Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT N
    Polymer: 36 Type: protein Length: 378
    Chains: o
    EC#: 1.6.5.3   
    Details: SUBUNIT NUON (CHAIN2)
    Organism Escherichia coli BL21
    Molecule: NADH-QUINONE OXIDOREDUCTASE SUBUNIT K
    Polymer: 37 Type: protein Length: 281
    Chains: p
    EC#: 1.6.5.3   
    Details: SUBUNITS NUOA, J AND K (CHAIN3,6 AND 4L)
    Organism Escherichia coli BL21
    Membrane Protein:   Source: inferred by homology
    ALPHA-HELICAL
    Electron Transport Chain Complexes: Complex IV (Cytochrome C Oxidase)
    Cytochrome C Oxidase, aa3
     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus   Taxonomy    
    Polymer: 9
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 10
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 11
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 12
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 13
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 14
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 15
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 16
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 17
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 18
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 19
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 20
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 21
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 22
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 23
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 24
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 25
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 26
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 27
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 28
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 29
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 30
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 31
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 32
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 33
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 34
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 35
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 36
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 37
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Ligand Chemical Component Hide
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    UNK
    Search 
    UNK C4 H9 N O2 lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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