2X97

Crystal structure of AnCE-RXP407 complex

Structural Biology Knowledgebase: 2X97 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2X97

Classification: HYDROLASE

Total Structure Weight: 71232.54

Macromolecule Entities
Molecule Chains Length Organism Details
ANGIOTENSIN CONVERTING ENZYME A 598 Drosophila melanogaster EC#: 3.4.15.1 IUBMB
Fragment: RESIDUES 17-614
Gene Name(s): Ance Race CG8827

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RX4
Query on RX4

A N~2~-acetyl-N-{(1R)-1-[(S)-[(2S)-3-{[(2S)- 1-amino-1-oxopropan-2-yl]amino}-2-methyl- 3-oxopropyl](hydroxy)phosphoryl]-2-phenylethyl}- L-alpha-asparagine
RXP407, (Synonym)
C21 H31 N4 O8 P
OCAZUTUOYLAIOA-OSRSDYAFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RX4 N/A in BindingDB
Ki: 2200 nM  BindingMOAD
Ki: 2200 nM  PDBbind
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001050 (ACE,RT1,ALA,ASP,NH2) A RXP407 Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.172
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 173.09 α = 90.00
b = 173.09 β = 90.00
c = 101.90 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-03-14
  • Released Date: 2010-06-02
  • Deposition author(s): Akif, M., Georgiadis, D., Mahajan, A., Dive, V., Sturrock, E.D., Isaac, R.E., Acharya, K.R.

Revision History

  • 2013-03-06
    Type: Other | Details: Add PRD info