2VN1

CRYSTAL STRUCTURE OF THE FK506-BINDING DOMAIN OF PLASMODIUM FALCIPARUM FKBP35 IN COMPLEX WITH FK506

Structural Biology Knowledgebase: 2VN1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VN1

Classification: ISOMERASE

Total Structure Weight: 30671.12

Macromolecule Entities
Molecule Chains Length Organism Details
70 KDA PEPTIDYLPROLYL ISOMERASE A, B 129 Plasmodium falciparum EC#: 5.2.1.8 IUBMB
Fragment: FK506-BINDING DOMAIN, RESIDUES 1-127
Gene Name(s): FKBP35 PFL2275c

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FK5
Query on FK5

A, B 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN
K506 (Synonym)
C44 H69 N O12
QJJXYPPXXYFBGM-LFZNUXCKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.194
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.06 α = 90.00
b = 63.06 β = 90.00
c = 167.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-30
  • Released Date: 2008-05-20
  • Deposition author(s): Kotaka, M., Alag, R., Ye, H., Preiser, P.R., Yoon, H.S., Lescar, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4