2VEW

CRYSTAL STRUCUTRE OF PROTEIN TYROSINE PHOSPHATASE 1B IN COMPLEX WITH AN ISOTHIAZOLIDINONE-CONTAINING INHIBITOR

Structural Biology Knowledgebase: 2VEW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VEW

Classification: HYDROLASE

Total Structure Weight: 37974.88

Macromolecule Entities
Molecule Chains Length Organism Details
TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 1 A 321 Homo sapiens EC#: 3.1.3.48 IUBMB
Fragment: RESIDUES 1-321
Gene Name(s): PTPN1 Gene View PTP1B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IZ3
Query on IZ3

A 3-fluoro-N-[(1S)-1-[4-[(2-fluorophenyl)methyl]imidazol- 2-yl]-2-[4-[(5S)-1,1,3-trioxo-1,2-thiazolidin- 5-yl]phenyl]ethyl]benzenesulfonamide
C27 H22 F2 N4 O5 S2
VAXRFGMVKHOGJO-DQEYMECFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
IZ3 N/A in BindingDB
IC50: 64 nM  BindingMOAD
IC50: 64 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.201
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.80 α = 90.00
b = 72.72 β = 90.00
c = 88.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-27
  • Released Date: 2007-11-06
  • Deposition author(s): Douty, B., Wayland, B., Ala, P.J., Bower, M.J., Pruitt, J., Bostrom, L., Wei, M., Klabe, R., Gonneville, L., Wynn, R., Burn, T.C., Liu, P.C.C., Combs, A.P., Yue, E.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4